Factsheet for Bra000690.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90733	Canola	plastid	95.16	95.01
Bra038370.1-P	Field mustard	cytosol	50.81	87.26
AT4G09730.1	Thale cress	mitochondrion, plastid	81.77	81.64
GSMUA_Achr9P28700_001	Banana	nucleus	53.39	67.83
VIT_18s0001g02530.t01	Wine grape	plastid	62.9	61.42
EES00166	Sorghum	mitochondrion	59.19	59.97
Os01t0184500-01	Rice	mitochondrion	60.16	59.68
Solyc12g056740.1.1	Tomato	nucleus	61.13	59.59
PGSC0003DMT400059671	Potato	mitochondrion, plastid, vacuole	60.65	58.93
KRH70245	Soybean	nucleus	60.0	58.49
TraesCS3B01G131400.1	Wheat	mitochondrion	57.9	56.71
TraesCS3A01G112800.1	Wheat	mitochondrion	57.74	55.94
KRH08609	Soybean	plastid	16.94	28.15
KRH70239	Soybean	mitochondrion	16.29	27.08
Bra035413.1-P	Field mustard	mitochondrion, plastid	20.16	21.85
Bra029613.1-P	Field mustard	plastid	22.26	18.55

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra000690	EnsemblPlants:Bra000690.1	EnsemblPlants:Bra000690.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4C912	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF247	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00025402FA
SEG:seg	:	:	:	:	:

Description

AT4G09730 (E=1e-279) | DEAD/DEAH box helicase, putative

Coordinates

chrA03:+:12482629..12485493

Molecular Weight (calculated)

68465.7 Da

IEP (calculated)

10.725

GRAVY (calculated)

-0.472

Length

620 amino acids

Sequence
(BLAST)

001: MVGASRTLLS LSLSSSSLFT FSRTPNVIPL LRLHKPSSIF RHALRRPLCA AAAAPTETNI AEPDQLKHTI LLERLRLRHL KESAAKPQQR PSSVVGIGED
101: QNMKSKKKKM AESFEELGLS EEVMGALKEM NIEAPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAT LGKITKPRRP RTVVLCPTRE
201: LSEQVYRVAK SVSHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPDIRKFLAP LKQRALKTND
301: QGFQTVLVTA TMTTAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFVKLS GSEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQVSTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVIMFDFPK NSIDYLHRTG RTARMGAKGK VTSLISRKDQ MLAARIEEAM RNNESLEALT
501: NNNVRRDAAR TQITQEKGRS VKQIRAVSKQ RNTRDRGTSS PPARSAGVKT PVRKSTSVRK STSGRASSPP EKSTKPKRKI LKTVGSRSIA ARGKKGSERT
601: GKKLSVVGFR GRSSAARPSS

Best Arabidopsis Sequence Match ( AT4G09730.1 )
(BLAST)

001: MVGASRTILS LSLSSSLFTF SKIPHVFPFL RLHKPRFHHA FRPLYSAAAT TSSPTTETNV TDPDQLKHTI LLERLRLRHL KESAKPPQQR PSSVVGVEEE
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S

Arabidopsis Description

RH39RH39 [Source:UniProtKB/TrEMBL;Acc:A0A178V449]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.