Factsheet for Os01t0184500-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00166	Sorghum	mitochondrion	76.48	78.1
CDY72046	Canola	cytosol	18.88	76.13
Bra038370.1-P	Field mustard	cytosol	41.92	72.58
GSMUA_Achr9P28700_001	Banana	nucleus	56.16	71.93
TraesCS3B01G131400.1	Wheat	mitochondrion	69.6	68.72
TraesCS3A01G112800.1	Wheat	mitochondrion	70.24	68.59
VIT_18s0001g02530.t01	Wine grape	plastid	62.88	61.89
Bra000690.1-P	Field mustard	plastid	59.68	60.16
AT4G09730.1	Thale cress	mitochondrion, plastid	58.72	59.1
KRH70245	Soybean	nucleus	60.0	58.96
PGSC0003DMT400059671	Potato	mitochondrion, plastid, vacuole	60.0	58.78
Solyc12g056740.1.1	Tomato	nucleus	59.52	58.49
Os03t0108600-01	Rice	mitochondrion, plastid	22.24	21.68
Os09t0383400-01	Rice	mitochondrion	16.8	21.08

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4325344	EMBL:AK060699	ProteinID:BAD67795.1	ProteinID:BAF04148.1
ProteinID:BAS70765.1	InterPro:DEAD/DEAH_box_helicase_dom	ProteinID:EEE54007.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	GO:GO:0016887	GO:GO:0070180	GO:GO:1901259	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os01g0184500	EnsemblPlants:Os01t0184500-01
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF247	UniProt:Q5VRY0	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	SignalP:SignalP-noTM	UniParc:UPI0000457CA2	RefSeq:XP_015613578.1	RefSeq:XP_015613586.1	SEG:seg

Description

RNA helicase 39DEAD-like helicase, N-terminal domain containing protein. (Os01t0184500-01)

Coordinates

chr1:-:4485764..4490158

Molecular Weight (calculated)

67864.1 Da

IEP (calculated)

10.902

GRAVY (calculated)

-0.417

Length

625 amino acids

Sequence
(BLAST)

001: MAMAGAAGRC LMLTRPSPLL RLRLLRAALA TTTTTTTAAG ASAVTAPTEP ETTAREAPSR HELLLERLRQ RHLKGVPAAT PRPAQREKGR GGGGGGAQEL
101: QQKRRVEVVD SFEELGLGEE VMAALGEMGI SKPTEIQCVG VPAVLAGTSV VLGSHTGSGK TLAYLLPLVQ LLRRDEAMLG MSMKPRRPRA VVLCPTRELT
201: EQVFRVAKSI SHHARFRSTM VSGGSRIRPQ EDSLNMPVDM VVGTPGRILD HIKDGNMVYG DIKYLVLDEA DTMFDQGFGP DIRKFLAPLK NRAAKPGDQG
301: FQTVLVTATM TKAVQKLIDE EFEGIVHLRT TTFQKRVATA RHDFIKLSGS ENKLEALLQV LEPSLAKGNK VMVFCNTLNS SRAVDHFLTE NQISTVNYHG
401: EVPAEERVEN LNKFRNEEGD CPTLVCTDLA ARGLDLDVDH VIMFDFPSNS IDYLHRTGRT ARMGAKGKVT SLVAKKDVTL ATRIEEAMKK NESLEALTTN
501: NVRRAAVNPQ YTSTKGRPSA LKVVNQKGRR GVALQTKSSR IVKDTTSSRR RSPIRSQPRS KSTSSGKAKP VRSAKPSKSS SPSPKVAKSR PRPEGRKGDA
601: LNKLGSKLSV VGFRGRSSGK SAQAS

Best Arabidopsis Sequence Match ( AT4G09730.1 )
(BLAST)

001: MVGASRTILS LSLSSSLFTF SKIPHVFPFL RLHKPRFHHA FRPLYSAAAT TSSPTTETNV TDPDQLKHTI LLERLRLRHL KESAKPPQQR PSSVVGVEEE
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S

Arabidopsis Description

RH39RH39 [Source:UniProtKB/TrEMBL;Acc:A0A178V449]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.