Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, vacuole
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g056740.1.1 | Tomato | nucleus | 96.71 | 97.01 |
| CDY72046 | Canola | cytosol | 17.87 | 73.55 |
| Bra038370.1-P | Field mustard | cytosol | 40.6 | 71.75 |
| GSMUA_Achr9P28700_001 | Banana | nucleus | 54.08 | 70.7 |
| VIT_18s0001g02530.t01 | Wine grape | plastid | 64.89 | 65.2 |
| EES00166 | Sorghum | mitochondrion | 60.03 | 62.58 |
| KRH70245 | Soybean | nucleus | 61.13 | 61.32 |
| AT4G09730.1 | Thale cress | mitochondrion, plastid | 59.56 | 61.19 |
| Bra000690.1-P | Field mustard | plastid | 58.93 | 60.65 |
| Os01t0184500-01 | Rice | mitochondrion | 58.78 | 60.0 |
| TraesCS3B01G131400.1 | Wheat | mitochondrion | 58.93 | 59.4 |
| TraesCS3A01G112800.1 | Wheat | mitochondrion | 58.62 | 58.44 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | UniProt:M1C4K2 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | EnsemblPlantsGene:PGSC0003DMG400023195 |
| PGSC:PGSC0003DMG400023195 | EnsemblPlants:PGSC0003DMT400059671 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF247 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI000296B0A9 |
| SEG:seg | : | : | : | : | : |
Description
DEAD-box ATP-dependent RNA helicase 39 [Source:PGSC_GENE;Acc:PGSC0003DMG400023195]
Coordinates
chr12:-:54853693..54861561
Molecular Weight (calculated)
70123.8 Da
IEP (calculated)
10.592
GRAVY (calculated)
-0.472
Length
638 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVTGRALLN LSLLPFRFPL TRNPLLPHPR RVYLGFRPLS STITTAPSYA AAAAAEEEDA LQPVKHSILL ERLRLRHLKE SPKPNSEIKQ LVRKQAEVDD
101: GGVKKSKKKA VASSFEELGL TEEVMGALGE MGISEPTEIQ SIGIPAVIEG KSVVLGSHTG SGKTLAYMLP MVQLLRRDEE LDGMLMKPRR PRAVVLCPTR
201: ELCEQVFRVA KSISHHARFR STMISGGGRL RPQEDCLASP IDMIVGTPGR VLQHIEEGNM VYGDIKYLVL DEADTMFDRG FGPDIRKFLA PLNNRASKTG
301: DQGFQTVLVT ATMTKAVQKL VDEEFQGIEH LRTSSLHKKI ASARHDFIKL SGSENKMEAL LQVLEPSLAK GNRVMVFCNT LNSSRAVDHF LNETQISTVN
401: YHGEVPAEQR VENLAKFKSN EGDCPTLVCT DLAARGLDLD VDHVIMFDFP KNSIDYLHRT GRTARMGAKG KVTSLIAKKD LLLANCIEEA IKKNESLESL
501: SVDGIKRDNA RSRITEQKDK REKSVKVSNS RGKPTAPTGK SSSVTRKTID SKRSPKTTDS KRSPKTADSK RSPGTKFGKV PAKSKPKIAM NVSKKTSSST
601: GKRRVDSRSS SVSTKKLNVV GFRGRSSSSS KNTRVKSA
101: GGVKKSKKKA VASSFEELGL TEEVMGALGE MGISEPTEIQ SIGIPAVIEG KSVVLGSHTG SGKTLAYMLP MVQLLRRDEE LDGMLMKPRR PRAVVLCPTR
201: ELCEQVFRVA KSISHHARFR STMISGGGRL RPQEDCLASP IDMIVGTPGR VLQHIEEGNM VYGDIKYLVL DEADTMFDRG FGPDIRKFLA PLNNRASKTG
301: DQGFQTVLVT ATMTKAVQKL VDEEFQGIEH LRTSSLHKKI ASARHDFIKL SGSENKMEAL LQVLEPSLAK GNRVMVFCNT LNSSRAVDHF LNETQISTVN
401: YHGEVPAEQR VENLAKFKSN EGDCPTLVCT DLAARGLDLD VDHVIMFDFP KNSIDYLHRT GRTARMGAKG KVTSLIAKKD LLLANCIEEA IKKNESLESL
501: SVDGIKRDNA RSRITEQKDK REKSVKVSNS RGKPTAPTGK SSSVTRKTID SKRSPKTTDS KRSPKTADSK RSPGTKFGKV PAKSKPKIAM NVSKKTSSST
601: GKRRVDSRSS SVSTKKLNVV GFRGRSSSSS KNTRVKSA
001: MVGASRTILS LSLSSSLFTF SKIPHVFPFL RLHKPRFHHA FRPLYSAAAT TSSPTTETNV TDPDQLKHTI LLERLRLRHL KESAKPPQQR PSSVVGVEEE
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S
Arabidopsis Description
RH39RH39 [Source:UniProtKB/TrEMBL;Acc:A0A178V449]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.