CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72046	Canola	cytosol	18.55	76.13
Bra038370.1-P	Field mustard	cytosol	41.04	72.3
GSMUA_Achr9P28700_001	Banana	nucleus	53.46	69.67
VIT_18s0001g02530.t01	Wine grape	plastid	62.89	62.99
Solyc12g056740.1.1	Tomato	nucleus	61.79	61.79
PGSC0003DMT400059671	Potato	mitochondrion, plastid, vacuole	61.32	61.13
AT4G09730.1	Thale cress	mitochondrion, plastid	59.28	60.71
Bra000690.1-P	Field mustard	plastid	58.49	60.0
Os01t0184500-01	Rice	mitochondrion	58.96	60.0
EES00166	Sorghum	mitochondrion	57.55	59.8
TraesCS3B01G131400.1	Wheat	mitochondrion	57.7	57.98
TraesCS3A01G112800.1	Wheat	mitochondrion	58.18	57.81
KRH70239	Soybean	mitochondrion	16.82	28.69
KRH08609	Soybean	plastid	16.67	28.42
KRH60674	Soybean	nucleus	21.7	26.14
KRH51370	Soybean	nucleus	20.13	24.15
KRG99241	Soybean	plastid	18.71	20.55

Protein Annotations

EntrezGene:100805709	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02000756	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_02G078100
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1JDA7	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlants:KRH70245	ProteinID:KRH70245	ProteinID:KRH70245.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF247
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002336BDA	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:6740838..6748861

Molecular Weight (calculated)

69073.7 Da

IEP (calculated)

10.619

GRAVY (calculated)

-0.328

Length

636 amino acids

Sequence
(BLAST)

001: MLLLKTPLCY LNLNLPNTPS MAGATGRTLF TLSLSSSSSL TRLSLIPKRV PLPKPLPLFR RFRPLCSVSA AAPEAADAKH SILLERLRSR HLRDAAKAAP
101: EPRKKEKVAA AAAAAAAAAE AKEKKKAVAS FEELGLSEEV MGAVREMGIE VPTEIQSIGI PAVLEEKSVV LGSHTGSGKT LAYLLPLAQL LRRDEQLNGI
201: LLKPRRPRAV VLCPTRELSE QVFRVAKSIS HHARFRCTMV SGGGRLRPQE DSLNNPIDVV VGTPGRVLQH IEEGNMVYGD IKYLVLDEAD TMFDRGFGPD
301: IRKFIGPLKN RASKPDGLGF QTILVTATMT KAVQNLIDEE FLGIVHLRTS TLHKKISSAR HDFIKLAGSE NKLEALLQVL EPSLAKGNRV MVFCNTLDSS
401: RAVDHFLGEN QISAVNYHGE VPAEQRVENL RKFKSDGDDC PTLVCTDLAA RGLDLDVDHV VMFDFPLNSI DYLHRTGRTA RMGAKGKVTS LVAKKDLDLA
501: SKIEDALRKN ESLEAITKES VRRDIARTQN QSTEKGKSKR LVKVSKVMGK SGSRFGSGNN GSGMKSGKGS PVKSMKKGIQ VSKSGKSSSA NSLRKASTEK
601: RQSSKMVSAT KSTNSKLNVV GFRGKNSSSN NKESGL

Best Arabidopsis Sequence Match ( AT4G09730.1 )
(BLAST)

001: MVGASRTILS LSLSSSLFTF SKIPHVFPFL RLHKPRFHHA FRPLYSAAAT TSSPTTETNV TDPDQLKHTI LLERLRLRHL KESAKPPQQR PSSVVGVEEE
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S

Arabidopsis Description

RH39RH39 [Source:UniProtKB/TrEMBL;Acc:A0A178V449]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.