CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70239	Soybean	mitochondrion	75.6	75.6
CDX84964	Canola	cytosol	6.97	33.33
CDY20823	Canola	cytosol	11.53	22.16
Bra038370.1-P	Field mustard	cytosol	17.96	18.56
AT4G09730.1	Thale cress	mitochondrion, plastid	29.49	17.71
Bra000690.1-P	Field mustard	plastid	28.15	16.94
KRH70245	Soybean	nucleus	28.42	16.67
KRH60674	Soybean	nucleus	19.84	14.02
KRH51370	Soybean	nucleus	19.03	13.4
KRG99241	Soybean	plastid	16.09	10.36

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:102662794	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02010183	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_16G160900	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005524	InterPro:Helicase_ATP-bd	UniProt:I1MP19	InterPro:IPR002004	InterPro:IPR014001	InterPro:IPR014014
EnsemblPlants:KRH08609	ProteinID:KRH08609	ProteinID:KRH08609.1	InterPro:P-loop_NTPase	InterPro:PABP-dom	InterPro:PABP_HYD
PFAM:PF00270	PFAM:PF00658	PFscan:PS51192	PFscan:PS51195	PFscan:PS51309	PANTHER:PTHR24031
PANTHER:PTHR24031:SF247	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00517	SUPFAM:SSF52540	SUPFAM:SSF63570
UniParc:UPI00023D75DF	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:32013447..32016235

Molecular Weight (calculated)

40543.8 Da

IEP (calculated)

6.604

GRAVY (calculated)

-0.209

Length

373 amino acids

Sequence
(BLAST)

001: MRGRGRELLS LSFSLKHKPL AKSASPSSSF FRSSITFSTS SSSVAPPIKE PKTSTSSSKS QRDSLIFERF KQRKLKGSPK DSKGTPQVCS TSVPLSLNAD
101: TEMVVQKGVQ NENDPTMVVG GFKELGVSEE LVEVMEGIGE FEPSEIQCVA IPAVLEGKSV LLSSPSEPGR TLAFLLPLIQ LLRRDRELPG SNSKHPRAIV
201: LCATEEKAAQ CFNAAKYIIH NVELKSVKDR PSPGNGESHA SIGLMIGTPC EILEYIEEGS VVPAEIRYLV LDEADCILGG GLGPDIHKIL RPLQDQESKS
301: SVKRLQTILV ISAIAEVLGE QSPIVKHLEC DHAGNISAMS LEMEQTEVFH FTESLHALRK KVAEAMDSLL KQQ

Best Arabidopsis Sequence Match ( AT4G09730.1 )
(BLAST)

001: MVGASRTILS LSLSSSLFTF SKIPHVFPFL RLHKPRFHHA FRPLYSAAAT TSSPTTETNV TDPDQLKHTI LLERLRLRHL KESAKPPQQR PSSVVGVEEE
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S

Arabidopsis Description

RH39RH39 [Source:UniProtKB/TrEMBL;Acc:A0A178V449]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.