CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08609	Soybean	plastid	75.6	75.6
CDX84964	Canola	cytosol	6.97	33.33
CDY20823	Canola	cytosol	11.26	21.65
Bra038370.1-P	Field mustard	cytosol	18.5	19.11
AT4G09730.1	Thale cress	mitochondrion, plastid	28.69	17.23
KRH70245	Soybean	nucleus	28.69	16.82
Bra000690.1-P	Field mustard	plastid	27.08	16.29
KRH51370	Soybean	nucleus	17.69	12.45
KRH60674	Soybean	nucleus	17.43	12.31
KRG99241	Soybean	plastid	14.48	9.33

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:100800575	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02000756	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_02G077700	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005524	InterPro:Helicase_ATP-bd	UniProt:I1JDA5	InterPro:IPR002004	InterPro:IPR014001	InterPro:IPR014014
EnsemblPlants:KRH70239	ProteinID:KRH70239	ProteinID:KRH70239.1	InterPro:P-loop_NTPase	InterPro:PABP-dom	InterPro:PABP_HYD
PFAM:PF00270	PFAM:PF00658	PFscan:PS51192	PFscan:PS51195	PFscan:PS51309	PANTHER:PTHR24031
PANTHER:PTHR24031:SF247	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00517	SUPFAM:SSF52540	SUPFAM:SSF63570
UniParc:UPI000233747E	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:6724400..6727697

Molecular Weight (calculated)

40616.7 Da

IEP (calculated)

5.349

GRAVY (calculated)

-0.236

Length

373 amino acids

Sequence
(BLAST)

001: MRRRLRELLS LCFSLKHKPL AKSAPPPTSF LQSSITFSTS SSSATPPIEE PKTSTSSSKS QRDSLIFEQF KQRKLKGSPK DSKGTPQVCS TSVPLSSDAD
101: TEKVVQKGVR NENDPTLVVR GFKELGVSEE LVEVMEGIGE FVPTEIQCVA IPAVLEGKSV LLSSPSEPDR TLAFLLPLIQ LLRRDGGLLG SNSKYPQAIV
201: LCATEEKSEQ CFNAAKYIIH NAELKSAKDS ASPDNGQSKA SIGLMIGTPS EILEYIEEGS VVPAEIRYLV LDEADCMLGS GLGPEIHKIL RPLQDQESKS
301: CVKRLQTILA ISTIAEVLGE QSSVVKHLEC DHAGNISAMS LEMEQTEVFH FTESLDALRK KVAEAMDSLL KQQ

Best Arabidopsis Sequence Match ( AT4G09730.1 )
(BLAST)

001: MVGASRTILS LSLSSSLFTF SKIPHVFPFL RLHKPRFHHA FRPLYSAAAT TSSPTTETNV TDPDQLKHTI LLERLRLRHL KESAKPPQQR PSSVVGVEEE
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S

Arabidopsis Description

RH39RH39 [Source:UniProtKB/TrEMBL;Acc:A0A178V449]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.