CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72046	Canola	cytosol	33.51	41.94
CDY48909	Canola	cytosol	32.99	14.58
CDX90733	Canola	plastid	41.24	12.88
KRH08609	Soybean	plastid	22.16	11.53
KRH70239	Soybean	mitochondrion	21.65	11.26
CDY61158	Canola	plastid	18.04	6.12
CDY69637	Canola	mitochondrion, plastid	17.01	6.1
CDY24656	Canola	mitochondrion	19.59	5.97
CDY05302	Canola	plastid	19.59	5.91
CDY64619	Canola	cytosol	2.06	2.08
CDX73166	Canola	cytosol	1.55	1.56
CDX84964	Canola	cytosol	0.0	0.0
CDY05074	Canola	mitochondrion	0.0	0.0
CDY24505	Canola	cytosol	0.0	0.0
CDY64618	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078G841	UniProt:A0A078G841	EnsemblPlants:CDY20823	ProteinID:CDY20823
ProteinID:CDY20823.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00013087001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFscan:PS51195	PANTHER:PTHR34360	PANTHER:PTHR34360:SF1	InterPro:RNA_helicase_DEAD_Q_motif	SUPFAM:SSF52540	UniParc:UPI0004EE9AEB
SEG:seg	:	:	:	:	:

Description

BnaC07g06720DBnaC07g06720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G841]

Coordinates

chrLK032112:-:529586..530971

Molecular Weight (calculated)

21296.6 Da

IEP (calculated)

4.598

GRAVY (calculated)

-0.344

Length

194 amino acids

Sequence
(BLAST)

001: MAESFEELGL SEEVMGALKE MSIEAPTEIQ CIGIPAVMDR KSVVLGSHTG SGKTLAYLLP IVQLMREDEA TLESQVDEKA REVKGKDELV AEEEKLLKEK
101: EDKIVSLQTE VSSLQGSSDS AKQLGKVQAR VVELEKQVRL LSGGTGNFLE QKNKEKTSTE ARTKEAEKKL TELNSSLDKV CIFPLVSLSI LGTW

Best Arabidopsis Sequence Match ( AT4G31340.2 )
(BLAST)

001: MAAAKLVALL LLALLFTTSV FADADEPEVS EAAGSDGSSK IHLDQLNAKI RALESQIDEK TREVQGKDEV VAEKEKLLKE REDKIASLQT EVSSLQKKGS
101: SDSAKQLGKA QARADELEKQ VEVLKNFLEQ KNKEKDSTEA RTNEAEKKLR ELNSSLDKLQ KTNEEQKNKI GKLERAIKIA EEEMLRTKLE ATTKAKELLE
201: AHGSWLPPWL AVHWFKFQTY TETHWEAHGK PAVETVILKV TEAKAQAEKW AEPHVENVKT KYIPAIKETV TIHVEPHFRT LSIKAKEAYH SSKSAVSPHI
301: VTVQEFVDPY YQEAKKFSKP YVDQVATTTK PHVDKMKVAM KPYTTKVIIV YTEFLESATT YHNQVQAHVE RKLKSHELTE PFATNEFVWF AASALLVFPI
401: FVAYRVLSSL FWQHKDKETC

Arabidopsis Description

AT4G31340 protein [Source:UniProtKB/TrEMBL;Acc:Q8GUN1]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.