Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 4
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90733 | Canola | plastid | 97.35 | 41.38 |
| CDY64618 | Canola | cytosol | 18.94 | 38.17 |
| AT4G09730.1 | Thale cress | mitochondrion, plastid | 85.98 | 36.55 |
| CDY24505 | Canola | cytosol | 20.08 | 34.42 |
| CDY48909 | Canola | cytosol | 48.11 | 28.93 |
| CDY64619 | Canola | cytosol | 19.32 | 26.56 |
| CDX73166 | Canola | cytosol | 12.5 | 17.19 |
| CDY61158 | Canola | plastid | 21.21 | 9.79 |
| CDY69637 | Canola | mitochondrion, plastid | 19.7 | 9.61 |
| CDY24656 | Canola | mitochondrion | 17.42 | 7.22 |
| CDY05302 | Canola | plastid | 17.42 | 7.15 |
| CDX84964 | Canola | cytosol | 1.14 | 3.85 |
| CDY72046 | Canola | cytosol | 1.89 | 3.23 |
| CDY20823 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY05074 | EnsemblPlantsGene:GSBRNA2T00119835001 | Gene3D:3.40.50.300 | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:P-loop_NTPase |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF247 | PFAM:PF00271 | PFscan:PS51194 | ProteinID:CDY05074 | ProteinID:CDY05074.1 |
| SEG:seg | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EF0647 | MapMan:35.1 | : |
Description
BnaC03g28720D
Coordinates
chrLK031959:+:444918..446267
Molecular Weight (calculated)
29116.8 Da
IEP (calculated)
11.295
GRAVY (calculated)
-0.792
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMQVLEPSL AKGSKVMVFC NTLNSSRAVD HYLSENQVST VNYHGEVPAE QRVENLKRFK DEEGDCPTLV CTDLAARGLD LDVDHVIMFD FPKNSIDYLH
101: RTGRTARMGA KGKVTSLISR KDQMLAARIE EAMRNNESLE ALTNDNVRRD AARTQITQEK GRSVKQIRAV SKQRNTRDRG TSSSPPARPA GVKTPVRKST
201: SVRKSTSGRT SSSPEKSTKP KRKILKTVGS RSIAARGKKG SERTGKKLSV VGFRGRSSAA RPSS
101: RTGRTARMGA KGKVTSLISR KDQMLAARIE EAMRNNESLE ALTNDNVRRD AARTQITQEK GRSVKQIRAV SKQRNTRDRG TSSSPPARPA GVKTPVRKST
201: SVRKSTSGRT SSSPEKSTKP KRKILKTVGS RSIAARGKKG SERTGKKLSV VGFRGRSSAA RPSS
001: MVGASRTILS LSLSSSLFTF SKIPHVFPFL RLHKPRFHHA FRPLYSAAAT TSSPTTETNV TDPDQLKHTI LLERLRLRHL KESAKPPQQR PSSVVGVEEE
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S
Arabidopsis Description
RH39RH39 [Source:UniProtKB/TrEMBL;Acc:A0A178V449]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.