CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64618	Canola	cytosol	67.19	98.47
CDY24505	Canola	cytosol	59.38	74.03
HORVU2Hr1G060040.2	Barley	plastid	17.19	24.81
CDY69637	Canola	mitochondrion, plastid	67.19	23.84
CDY61158	Canola	plastid	67.71	22.73
AT1G59990.1	Thale cress	plastid	66.67	22.03
CDY05074	Canola	mitochondrion	26.56	19.32
KRG99241	Soybean	plastid	51.56	17.1
Solyc05g006130.2.1	Tomato	mitochondrion, plastid	48.96	16.82
Zm00001d020357_P003	Maize	plastid	49.48	16.55
TraesCS5B01G199500.1	Wheat	mitochondrion	48.44	16.34
TraesCS5D01G206600.1	Wheat	mitochondrion	48.44	16.34
KXG35557	Sorghum	mitochondrion	50.0	16.11
VIT_01s0026g00640.t01	Wine grape	plastid	49.48	16.02
GSMUA_Achr8P23590_001	Banana	mitochondrion	48.44	15.63
HORVU5Hr1G059860.2	Barley	cytosol, peroxisome	48.44	15.55
TraesCS5A01G200900.1	Wheat	mitochondrion	47.92	15.26
CDX73166	Canola	cytosol	14.06	14.06
Os09t0383400-01	Rice	mitochondrion	30.73	11.85
CDY48909	Canola	cytosol	27.08	11.85
CDX90733	Canola	plastid	30.21	9.34
CDY24656	Canola	mitochondrion	21.88	6.59
CDY05302	Canola	plastid	21.88	6.53
CDX84964	Canola	cytosol	2.6	6.41
CDY72046	Canola	cytosol	2.6	3.23
CDY20823	Canola	cytosol	2.08	2.06

Protein Annotations

EnsemblPlants:CDY64619	EnsemblPlantsGene:GSBRNA2T00042433001	Gene3D:3.40.50.300	InterPro:Helicase_C	InterPro:IPR001650	InterPro:P-loop_NTPase
PANTHER:PTHR24031	PANTHER:PTHR24031:SF210	PFAM:PF00271	PFscan:PS51194	ProteinID:CDY64619	ProteinID:CDY64619.1
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0004EDF3F9	UniProt:A0A078JDA4	MapMan:35.1	:

Description

BnaCnng44370DBnaCnng44370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDA4]

Coordinates

chrLK034500:+:2413..3393

Molecular Weight (calculated)

21436.2 Da

IEP (calculated)

8.629

GRAVY (calculated)

-0.559

Length

192 amino acids

Sequence
(BLAST)

001: MFSETKEGHQ RTNDKSKHKK KYGNKTGRTF SRMSPHRIPI LQVDALIDAV NNNNNSTDRR TMVFANTVEA VEAVADILEK ASIQCYRYHK NHTLEERANI
101: LADFRENGGV FVCTDAAARG VDVPNVSHVI QADFSSCVVD FLHRIGRTAR AGQYGTVTSL YTEASRDLVE AIREAVKDGS ASGNCIQQEK RF

Best Arabidopsis Sequence Match ( AT1G59990.2 )
(BLAST)

001: MILSRSVSVL HLCGVSSSAP SKLLSQRFKV SFALAYGSSV SFRLSSLNRS DRKWVRGFAS ATEAEVEKKG NDTFFADHTV SWKSLGLSDN VSIALRDSGF
101: DRPSLTQAVC IPSILSGKDV IVAAETGSGK THGYLAPIID QLTNTALDSE VTNREERPFP LKNISLILCP NVMLCEQVVR MVNGLVDEDG NPLLRVEAVC
201: GSQGWPDRLP DIIVSTPAAL LNNIEPKRNR RLEFLRCVKY VVFDEADMLL CGSFQNQIIR LINMLRFDEK QVSRLAKSNL GRPMEIDASV PQIDLENEDD
301: AEFDEGSISE EEDEEEEEEY LDDIAQMPSV EAEAGSDTKK GWRRVRKIYT RSKQYIFIAA TLPVNGKKTA GGILKHMFQD AVWVSGNFLH RNSPRLKQKW
401: VEVTVDSQVD ALIEAVKNNN NTNTERTMVF ANTVEAVEAV ADILEKASIQ CYRYHKNHKL DERANILADF RETGGVFVCT DAAARGVDVP NVSHVIQADF
501: ASSAVDFLHR IGRTARAGQY GTVTSLYTEA NRDLVEAIRE AVKMGQPVET AFSRKRGFRN KVKKRGK

Arabidopsis Description

RH22DEAD-box ATP-dependent RNA helicase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q944S1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.