CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020357_P003	Maize	plastid	84.56	87.8
TraesCS5B01G199500.1	Wheat	mitochondrion	73.49	76.98
TraesCS5D01G206600.1	Wheat	mitochondrion	73.15	76.63
Os09t0383400-01	Rice	mitochondrion	61.58	73.69
HORVU5Hr1G059860.2	Barley	cytosol, peroxisome	72.99	72.74
TraesCS5A01G200900.1	Wheat	mitochondrion	72.82	71.97
CDY24505	Canola	cytosol	16.61	64.29
HORVU2Hr1G060040.2	Barley	plastid	13.93	62.41
CDY64618	Canola	cytosol	13.42	61.07
Solyc05g006130.2.1	Tomato	mitochondrion, plastid	52.85	56.35
GSMUA_Achr8P23590_001	Banana	mitochondrion	54.03	54.12
VIT_01s0026g00640.t01	Wine grape	plastid	52.68	52.95
KRG99241	Soybean	plastid	49.16	50.6
CDY69637	Canola	mitochondrion, plastid	45.81	50.46
Bra035413.1-P	Field mustard	mitochondrion, plastid	48.15	50.17
CDY64619	Canola	cytosol	16.11	50.0
CDY61158	Canola	plastid	47.99	50.0
AT1G59990.1	Thale cress	plastid	48.15	49.4
EES00166	Sorghum	mitochondrion	21.81	21.24
EER95670	Sorghum	mitochondrion, plastid	21.48	19.51

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1B6QCA9	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KXG35557	ProteinID:KXG35557	ProteinID:KXG35557.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF210	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3002G191100	SUPFAM:SSF52540
UniParc:UPI00081AD1CE	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:57752883..57756757

Molecular Weight (calculated)

65977.0 Da

IEP (calculated)

9.480

GRAVY (calculated)

-0.276

Length

596 amino acids

Sequence
(BLAST)

001: MRLEVARPRR PGPQHIRHHA MALHHLRLAP LALLRAASLP PLASSRIAAS RHRHVLLFAP PPPWPWRLLS PAARPRALAT AAEAEADDVG SGSANGFFAE
101: STSWGSLGVS ERLASALRGA GLSRPSLVQA TCIPHVLMEN DVIVAAETGS GKTHGYLVPL IEKLCSKSST TKDDNSQDTT PGAHDIVLVL CPNVMLCEQV
201: VRMANSLLDE SGEPLKSAAA VCGPKGWPAV HPDILVATPA ALLNYLFDYD PEKRRRERFL RNVKFVVFDE ADMLLCGSFE NQVIRLIHML RFDEKLLSRA
301: QDSGKEVSLG SDDGYLEDSR FETAEFSGSD EEIEDNIVQD RPVKVENSHV GARKDWRRVR KIYRRSKQYV FVAATLPQSG KRTAGGVLKR MFPDAVWVSG
401: TYLHCHNPRL ERRWIEVTAD TQVDALLNAV KYGLKSEVHD AKDVRRRTMV FTNTVDAANS VSDILRRVGI PCILYHRESS LEERANNLQS FRENGGVLVC
501: TDAAARGLDV PNVSHVIQAE FAACAVDFLH RVGRTARAGQ SGIVTSLYTE ANRDLVRAVR QAEELAQPVE RAFSRKRSFR NKLKKQALQK RAALVS

Best Arabidopsis Sequence Match ( AT1G59990.1 )
(BLAST)

001: MILSRSVSVL HLCGVSSSAP SKLLSQRFKV SFALAYGSSV SFRLSSLNRS DRKWVRGFAS ATEAEVEKKG NDTFFADHTV SWKSLGLSDN VSIALRDSGF
101: DRPSLTQAVC IPSILSGKDV IVAAETGSGK THGYLAPIID QLTNTALDSE VTNREERPFP LKNISLILCP NVMLCEQVVR MVNGLVDEDG NPLLRVEAVC
201: GSQGWPDRLP DIIVSTPAAL LNNIEPKRNR RLEFLRCVKY VVFDEADMLL CGSFQNQIIR LINMLRFDEK QVSRLAKSNL GRPMEIDASV PQIDLENEDD
301: AEFDEGSISE EEDEEEEEEY LDDIAQMPSV EAEAGSDTKK GWRRVRKIYT RSKQYIFIAA TLPVNGKKTA GGILKHMFQD AVWVSGNFLH RNSPRLKQKW
401: VEVTVDSQVD ALIEAVKNNN NTNTERTMVF ANTVEAVEAV ADILEKASIQ CYRYHKNHKL DERANILADF RETGGVFVCT DAAARGVDVP NVSHVIQADF
501: ASSAVDFLHR IGRTARAGQY GTVTSLYTEA NRDLVEAIRE AVKMGQPVET AFSRKRGFRN KVKKRAFLKA EEAEEPQAVR Y

Arabidopsis Description

RH22DEAD-box ATP-dependent RNA helicase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q944S1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.