CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0184500-01	Rice	mitochondrion	78.1	76.48
CDY72046	Canola	cytosol	19.12	75.48
GSMUA_Achr9P28700_001	Banana	nucleus	57.35	71.93
Bra038370.1-P	Field mustard	cytosol	41.83	70.91
TraesCS3A01G112800.1	Wheat	mitochondrion	72.55	69.38
TraesCS3B01G131400.1	Wheat	mitochondrion	71.41	69.04
VIT_18s0001g02530.t01	Wine grape	plastid	64.05	61.73
PGSC0003DMT400059671	Potato	mitochondrion, plastid, vacuole	62.58	60.03
Solyc12g056740.1.1	Tomato	nucleus	62.25	59.91
Bra000690.1-P	Field mustard	plastid	59.97	59.19
AT4G09730.1	Thale cress	mitochondrion, plastid	59.15	58.29
KRH70245	Soybean	nucleus	59.8	57.55
KXG35557	Sorghum	mitochondrion	21.24	21.81
EER95670	Sorghum	mitochondrion, plastid	22.88	21.34

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8078753	UniProt:C5XML6	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlants:EES00166
ProteinID:EES00166	ProteinID:EES00166.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
GO:GO:0016887	GO:GO:0070180	GO:GO:0080158	GO:GO:1901259	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF247	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3003G039300	SUPFAM:SSF52540	unigene:Sbi.7257	UniParc:UPI0001A844AE
RefSeq:XP_002455046.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:3689218..3694202

Molecular Weight (calculated)

66237.1 Da

IEP (calculated)

10.898

GRAVY (calculated)

-0.408

Length

612 amino acids

Sequence
(BLAST)

001: MAMAGAAAAG RCLLLSRPSP FRLRLLRAAL STAAPTIGPT STPAPPPRHE LLLERLRLRH LKDASSSPGA PAPASRGAER SSQQGKGKRV EAAESFEELG
101: LGEEVMAALG EMGISKPTEI QCVGVPAVLA GTSVVLGSHT GSGKTLAYLL PLVQLLRRDE AMLGISMKPR RPRAVVLCPT RELTEQVYRV AKSISHHARF
201: RSTMVSGGTR LRPQEDSLNM PVDMVVGTPG RILDHIKDGN MVYGDIKYLV LDEADTMFDQ GFGPDIRKFL APLKNRAAKP GDQGFQTVLV TATMTKAVQK
301: LIDEEFEGIV HLRTSSFQKR VSTARHDFIK LSGAENKLEA LLQVLEPSLA KGNKVMVFCN TLNSSRAVDH FLTENQISTV NYHGEVPAEE RVENLNKFRN
401: EEGDCPTLVC TDLAARGLDL DVDHVIMFDF PSNSIDYLHR TGRTARMGAK GKVTSIVAKK DVALATRIEE AMKKNESLEA LTTNNVRRAA SPQSVSTKGR
501: PSRLVKTSNA LKVVNQKGRR GVALSSKSSR TPKDTTSTRR RSPLKSQAKT TKSAAPRKAK PLKPSQSSTK ASKSKAKPEG RRSKSDALNK LGTKLSVVGF
601: RGRSSGKSAQ SS

Best Arabidopsis Sequence Match ( AT4G09730.1 )
(BLAST)

001: MVGASRTILS LSLSSSLFTF SKIPHVFPFL RLHKPRFHHA FRPLYSAAAT TSSPTTETNV TDPDQLKHTI LLERLRLRHL KESAKPPQQR PSSVVGVEEE
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S

Arabidopsis Description

RH39RH39 [Source:UniProtKB/TrEMBL;Acc:A0A178V449]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.