CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99396
EES11990
KXG30263

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06980.1	EER99396	AT1G30860.1	21798944
AT3G06980.1	EES11990	AT3G11590.1	21798944
AT3G06980.1	KXG30263	AT3G11590.1	21798944
AT3G06980.1	EES11990	AT5G22310.1	21798944
AT3G06980.1	KXG30263	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048531_P001	Maize	plastid	92.53	92.67
Os03t0108600-01	Rice	mitochondrion, plastid	79.57	81.44
TraesCS3B01G568500.1	Wheat	mitochondrion	68.6	69.77
TraesCS5A01G548800.2	Wheat	mitochondrion, plastid	69.05	68.84
TraesCS4D01G359000.1	Wheat	plastid	68.29	67.78
HORVU4Hr1G090840.3	Barley	plastid	68.9	67.66
Solyc11g045180.1.1	Tomato	nucleus	18.6	67.4
KRH51370	Soybean	nucleus	45.73	56.6
KRH60674	Soybean	nucleus	44.66	55.49
CDX73166	Canola	cytosol	15.55	53.12
GSMUA_Achr3P24670_001	Banana	plastid	52.13	51.27
VIT_05s0020g01130.t01	Wine grape	mitochondrion	49.39	45.83
Bra029613.1-P	Field mustard	plastid	49.09	43.28
AT3G06980.1	Thale cress	plastid	47.87	40.2
EES00166	Sorghum	mitochondrion	21.34	22.88
KXG35557	Sorghum	mitochondrion	19.51	21.48

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8059508	UniProt:C5WMQ1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlants:EER95670	ProteinID:EER95670	ProteinID:EER95670.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003724	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0006950	GO:GO:0006968	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009817	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	GO:GO:0071369	GO:GO:0071395	GO:GO:0071446	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF181	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3001G537700	SUPFAM:SSF52540	unigene:Sbi.6393	UniParc:UPI0001A8331F
RefSeq:XP_002468672.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:80058671..80062619

Molecular Weight (calculated)

72203.7 Da

IEP (calculated)

9.435

GRAVY (calculated)

-0.408

Length

656 amino acids

Sequence
(BLAST)

001: MEVAGAQARA VPLLLRHPAS LRSSVSVSCT GSRRSWAAAA TAEGDETRGF DKVPMDTPGA YRLVDRATGR SVIVWGGTDD GDEAAIPSPA VLSRTRTTDR
101: RSSQGVGGGT GIGNFGRLKA QKIKSLVTRS AHRKRESSSR SSTNRSGESS FDGSGDEEES YFERRKPVSD SEHRAKLSSD YRNGRTRGAH SLTSVLGQYR
201: GADDTGFPAS EATSGSKGWG NVADVTYGRQ NQKQREPLNF PQRKGPLDSG FFSRRTFKEI GCSDEILVVL RNFDFPRPSH IQAMAYGPIL EGRSCVIADQ
301: SGSGKTLAYL CPIIQNLRSE EVQGLHKSSP RNPRVIVLTP TAELASQVLN NCRLISKSGV PFRSMVATGG FRQKTQLESL NQELDVIIAT PGRFLYLLQE
401: GFVQLANLRC VVLDEVDILF GEEGFEQVLH QLITVAPVTT QYLFVTATLP LDIYNKVVET FPDCEVIMGP GVHRTSSRLE EILVDCSGDD NEEKNPETAF
501: SNKKSALLKI IEESPVRRTI IFCNKIETCR KVENALRRVD RKASQIKVLP FHAALDQAQR ITNIKEFLNK QTADSMFLVC TDRASRGIDF ANVNHVVLFD
601: YPRDPSEYVR RVGRTARGAS GNGKAFVFAV GKQVSLARRV MERNMKGHPL HDVPCV

Best Arabidopsis Sequence Match ( AT3G06980.1 )
(BLAST)

001: MLARAPPPYF NFPARNNTIC NRNEIVRLFR NGGGVVARGA GFTRRPLETS SSYDDSTDDG FVIISAADKE NEFAPPPSSD LLSSIPSESA RRNGSRSRGL
101: TASFGRLKAQ KVKALVGKVT QKKQHMSHNE EEDEDDASDE NYSADEGFGS SSILDLMRKK LAMKAIPRSG KSAERNEVKR ASKVRESRES RRDLDRLEGD
201: DEDVDEVSNP DRFTDNQRAG SRSSYSKGGY AANSRGKGDR LSVARDLDSF EGHGRAIDEV SNPRKFNDNE RAESRSSYSR DSSANSRGRE DRRFVAKELD
301: TFQGRDKAYD EVYNPRRFTD NERGLRGGSH SKGSDTNSRG WGDRRSVVYT RDMDDWRERN KTKDTRETGF FSRKTFAEIG CSEDMMKALK EQNFDRPAHI
401: QAMAFSPVID GKSCIIADQS GSGKTLAYLV PVIQRLREEE LQGHSKSSPG CPRVIVLVPT AELASQVLAN CRSISKSGVP FRSMVVTGGF RQRTQLENLE
501: QGVDVLIATP GRFTYLMNEG ILGLSNLRCA ILDEVDILFG DDEFEAALQN LINSSPVTAQ YLFVTATLPL EIYNKLVEVF PDCEVVMGPR VHRVSNALEE
601: FLVDCSGDDN AEKTPETAFQ NKKTALLQIM EENPVSKTII FCNKIETCRK VENIFKRVDR KERQLHVLPF HAALSQESRL TNMQEFTSSQ PEENSLFLVC
701: TDRASRGIDF SGVDHVVLFD FPRDPSEYVR RVGRTARGAR GKGKAFIFVV GKQVGLARRI IERNEKGHPV HDVPNAYEFT T

Arabidopsis Description

RH50DEAD-box ATP-dependent RNA helicase 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.