CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20823	Canola	cytosol	41.94	33.51
CDX84964	Canola	cytosol	16.13	32.05
CDY48909	Canola	cytosol	87.74	30.98
CDX90733	Canola	plastid	94.84	23.67
GSMUA_Achr9P28700_001	Banana	nucleus	71.61	22.75
EES00166	Sorghum	mitochondrion	75.48	19.12
Os01t0184500-01	Rice	mitochondrion	76.13	18.88
KRH70245	Soybean	nucleus	76.13	18.55
VIT_18s0001g02530.t01	Wine grape	plastid	75.48	18.43
Solyc12g056740.1.1	Tomato	nucleus	74.84	18.24
PGSC0003DMT400059671	Potato	mitochondrion, plastid, vacuole	73.55	17.87
TraesCS3B01G131400.1	Wheat	mitochondrion	72.26	17.69
TraesCS3A01G112800.1	Wheat	mitochondrion	72.9	17.66
CDY24656	Canola	mitochondrion	33.55	8.16
CDY05302	Canola	plastid	33.55	8.09
CDY69637	Canola	mitochondrion, plastid	26.45	7.58
CDY61158	Canola	plastid	25.81	6.99
CDX73166	Canola	cytosol	7.1	5.73
CDY64618	Canola	cytosol	2.58	3.05
CDY64619	Canola	cytosol	3.23	2.6
CDY24505	Canola	cytosol	2.58	2.6
CDY05074	Canola	mitochondrion	3.23	1.89

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078K2L3	UniProt:A0A078K2L3	EnsemblPlants:CDY72046	ProteinID:CDY72046
ProteinID:CDY72046.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00023383001	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PF00270	PFscan:PS51192	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF247	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI0004EF00A1	:	:	:

Description

BnaCnng75700DBnaCnng75700D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K2L3]

Coordinates

chrLK048706:+:854..2264

Molecular Weight (calculated)

17067.0 Da

IEP (calculated)

8.821

GRAVY (calculated)

-0.026

Length

155 amino acids

Sequence
(BLAST)

001: MGALKEMNIE APTEIQCIGV PAVMERKSVV LGSHTGSGKT LAYLLPIVQL MREDEATLGK ITKPRRPRTV VLCPTRELSE QVYRVAKSVS HHARFRSILV
101: SGGSRIRPQE DSLNNAIDMV VGTPGRILQH IEEGNMVYGD IAYLVCSYSG ILTLY

Best Arabidopsis Sequence Match ( AT4G09730.1 )
(BLAST)

001: MVGASRTILS LSLSSSLFTF SKIPHVFPFL RLHKPRFHHA FRPLYSAAAT TSSPTTETNV TDPDQLKHTI LLERLRLRHL KESAKPPQQR PSSVVGVEEE
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S

Arabidopsis Description

RH39RH39 [Source:UniProtKB/TrEMBL;Acc:A0A178V449]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.