CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70996
CDX73866
CDX88802
CDX92367
CDY01038
CDY02344
CDY08511
CDY09519
CDY12454
CDY52188
CDY56601
CDY67997

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06980.1	CDY02344	AT1G30860.1	21798944
AT3G06980.1	CDY09519	AT1G30860.1	21798944
AT3G06980.1	CDY12454	AT1G30860.1	21798944
AT3G06980.1	CDY52188	AT1G30860.1	21798944
AT3G06980.1	CDX73866	AT3G11590.1	21798944
AT3G06980.1	CDY01038	AT3G11590.1	21798944
AT3G06980.1	CDY08511	AT3G11590.1	21798944
AT3G06980.1	CDY56601	AT3G11590.1	21798944
AT3G06980.1	CDX70996	AT5G22310.1	21798944
AT3G06980.1	CDX88802	AT5G22310.1	21798944
AT3G06980.1	CDX92367	AT5G22310.1	21798944
AT3G06980.1	CDY67997	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24656	Canola	mitochondrion	73.41	74.1
CDX73166	Canola	cytosol	21.0	70.31
Bra029613.1-P	Field mustard	plastid	72.47	62.63
KRH51370	Soybean	nucleus	47.9	58.11
KRH60674	Soybean	nucleus	46.81	57.01
AT3G06980.1	Thale cress	plastid	62.36	51.34
VIT_05s0020g01130.t01	Wine grape	mitochondrion	52.57	47.81
GSMUA_Achr3P24670_001	Banana	plastid	47.9	46.18
Solyc11g045190.1.1	Tomato	nucleus	30.33	39.63
CDY72046	Canola	cytosol	8.09	33.55
CDY48909	Canola	cytosol	18.2	26.65
CDY64618	Canola	cytosol	4.98	24.43
CDX84964	Canola	cytosol	2.8	23.08
CDY24505	Canola	cytosol	5.44	22.73
CDX90733	Canola	plastid	21.93	22.71
CDY64619	Canola	cytosol	6.53	21.88
CDY20823	Canola	cytosol	5.91	19.59
CDY69637	Canola	mitochondrion, plastid	14.93	17.74
CDY05074	Canola	mitochondrion	7.15	17.42
CDY61158	Canola	plastid	15.24	17.13

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078EWF0	EnsemblPlants:CDY05302	ProteinID:CDY05302	ProteinID:CDY05302.1
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
EnsemblPlantsGene:GSBRNA2T00120132001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF181	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0004EE0524	SEG:seg	:	:	:	:

Description

BnaC05g45010D

Coordinates

chrLK031960:+:952974..956219

Molecular Weight (calculated)

71322.9 Da

IEP (calculated)

9.649

GRAVY (calculated)

-0.454

Length

643 amino acids

Sequence
(BLAST)

001: MLARAPPPSV TFPARNKVCN RREIVRLFRN GGGVITRAGF TRRPLEASCS NEVVSDSTDD GFIVIKAEHR ETELYPPPPP PPSIPPSESS RRNGSRSRGV
101: TASFGRLKAQ KVKALVGKVT QKKQQVSQVK RFSRVRESRE LRDTDRSQTN ERDSNGYAAA NSRGRGDRPS NAKNLDTFKG SDRAAGEFAN PRKGGAGNSR
201: GWGDRRSVVY ARDMEDWRER GNKTKSTRET GFFSRKSFAE VGCSEGMMKA LKENNFDRPA HIQALAFAPV VDGKSCIIAD QSGSGKTLAY LVPVIQRLRE
301: EELQGLSKSS SGCPRVIVLV PTAELASQVL ANCRLISKSG VPFRSMVVTG GFKQRTQLEN LEQGVDVLIA TPGRFTYLMN EGILGLSNLR CAILDEVDIL
401: FGDEEFESAL QNLISSSPVT AQYLFVTATL PLEIYNKLVE VFPDCEVVMG PRVHRVSNAL EEVLVDCSGD DYAEKTPETA FQNKKAALLQ IIEENPVAKT
501: IIFCNKIETC RKVENIFKRL DRNERQLHVL PFHAALAQGA RLTNMEEFTS SHPEDHSLFL VCTDRASRGI DFSGVDHVVL FDFPRDPSEY VRRVGRTARG
601: ARGEGKAFVF VVGKQVTLAR RIIERNQKGH PVHDVPNAYE FTT

Best Arabidopsis Sequence Match ( AT3G06980.1 )
(BLAST)

001: MLARAPPPYF NFPARNNTIC NRNEIVRLFR NGGGVVARGA GFTRRPLETS SSYDDSTDDG FVIISAADKE NEFAPPPSSD LLSSIPSESA RRNGSRSRGL
101: TASFGRLKAQ KVKALVGKVT QKKQHMSHNE EEDEDDASDE NYSADEGFGS SSILDLMRKK LAMKAIPRSG KSAERNEVKR ASKVRESRES RRDLDRLEGD
201: DEDVDEVSNP DRFTDNQRAG SRSSYSKGGY AANSRGKGDR LSVARDLDSF EGHGRAIDEV SNPRKFNDNE RAESRSSYSR DSSANSRGRE DRRFVAKELD
301: TFQGRDKAYD EVYNPRRFTD NERGLRGGSH SKGSDTNSRG WGDRRSVVYT RDMDDWRERN KTKDTRETGF FSRKTFAEIG CSEDMMKALK EQNFDRPAHI
401: QAMAFSPVID GKSCIIADQS GSGKTLAYLV PVIQRLREEE LQGHSKSSPG CPRVIVLVPT AELASQVLAN CRSISKSGVP FRSMVVTGGF RQRTQLENLE
501: QGVDVLIATP GRFTYLMNEG ILGLSNLRCA ILDEVDILFG DDEFEAALQN LINSSPVTAQ YLFVTATLPL EIYNKLVEVF PDCEVVMGPR VHRVSNALEE
601: FLVDCSGDDN AEKTPETAFQ NKKTALLQIM EENPVSKTII FCNKIETCRK VENIFKRVDR KERQLHVLPF HAALSQESRL TNMQEFTSSQ PEENSLFLVC
701: TDRASRGIDF SGVDHVVLFD FPRDPSEYVR RVGRTARGAR GKGKAFIFVV GKQVGLARRI IERNEKGHPV HDVPNAYEFT T

Arabidopsis Description

RH50DEAD-box ATP-dependent RNA helicase 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.