Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034827.1-P | Field mustard | plastid | 99.51 | 99.67 |
| CDY01038 | Canola | plastid | 97.56 | 98.36 |
| AT3G11590.1 | Thale cress | plastid | 89.27 | 88.26 |
| CDY56601 | Canola | cytosol, golgi, plastid | 45.85 | 76.42 |
| CDX73866 | Canola | cytosol | 45.37 | 75.61 |
| KRG96225 | Soybean | nucleus | 61.95 | 58.17 |
| VIT_08s0007g02790.t01 | Wine grape | plastid | 61.95 | 57.9 |
| KRH67971 | Soybean | plastid | 61.79 | 57.58 |
| PGSC0003DMT400072353 | Potato | plastid | 56.59 | 53.13 |
| Solyc10g083190.1.1 | Tomato | plastid | 55.77 | 51.89 |
| CDX70996 | Canola | nucleus | 28.29 | 36.63 |
| CDX88802 | Canola | nucleus | 27.64 | 36.32 |
| CDY67997 | Canola | mitochondrion, plastid | 26.67 | 34.82 |
| CDX92367 | Canola | mitochondrion, plastid | 27.15 | 34.79 |
| GSMUA_Achr6P16290_001 | Banana | nucleus | 34.15 | 34.04 |
| GSMUA_Achr6P08260_001 | Banana | nucleus | 28.29 | 30.37 |
| EES11990 | Sorghum | nucleus | 26.18 | 28.35 |
| HORVU2Hr1G069400.8 | Barley | nucleus | 23.25 | 28.09 |
| Zm00001d003996_P001 | Maize | nucleus | 25.85 | 27.94 |
| Os04t0382800-00 | Rice | nucleus | 25.85 | 27.85 |
| TraesCS2B01G299400.1 | Wheat | nucleus, plastid | 25.2 | 27.83 |
| Zm00001d025208_P002 | Maize | nucleus | 26.5 | 27.82 |
| Os02t0506100-00 | Rice | plastid | 19.67 | 27.75 |
| TraesCS2D01G281000.1 | Wheat | nucleus, plastid | 25.37 | 27.56 |
| TraesCS2A01G282200.1 | Wheat | nucleus | 25.37 | 27.56 |
| TraesCS7B01G035800.1 | Wheat | nucleus | 25.37 | 26.99 |
| TraesCS7D01G134000.1 | Wheat | nucleus | 25.37 | 26.94 |
| TraesCS7A01G134600.1 | Wheat | nucleus | 25.04 | 26.6 |
| CDX80001 | Canola | nucleus | 14.31 | 26.51 |
| KXG30263 | Sorghum | mitochondrion | 24.55 | 24.28 |
| CDY42023 | Canola | nucleus | 16.1 | 23.68 |
| Zm00001d000402_P001 | Maize | mitochondrion | 20.33 | 22.81 |
| CDY37111 | Canola | nucleus | 23.74 | 21.5 |
| CDY34403 | Canola | nucleus | 19.67 | 21.04 |
| CDY25414 | Canola | mitochondrion | 21.79 | 21.04 |
| CDY22812 | Canola | nucleus | 22.44 | 20.91 |
| CDY29821 | Canola | mitochondrion | 21.63 | 20.81 |
| CDY39728 | Canola | nucleus | 20.16 | 20.81 |
| CDY25566 | Canola | nucleus | 19.35 | 20.55 |
| CDY44461 | Canola | nucleus | 20.0 | 20.4 |
| CDX80002 | Canola | cytosol | 0.98 | 13.04 |
Protein Annotations
| EnsemblPlants:CDY08511 | EnsemblPlantsGene:GSBRNA2T00000285001 | ncoils:Coil | PANTHER:PTHR31071 | PANTHER:PTHR31071:SF7 | ProteinID:CDY08511 |
| ProteinID:CDY08511.1 | SEG:seg | UniParc:UPI0004EF0D08 | UniProt:A0A078F562 | MapMan:35.1 | : |
Description
BnaA05g27470DBnaA05g27470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F562]
Coordinates
chrLK031986:-:492773..496023
Molecular Weight (calculated)
69037.5 Da
IEP (calculated)
9.876
GRAVY (calculated)
-0.921
Length
615 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRQNQTVEN LLLLGKIRKR GCSSPTSSTS SVLREGYRFK RAIVVGKRGG STTPVPTWRL MGRSPSPAAS PGYAPSQCGS KTGRGGAPAA PVSARKLAAT
101: LWEMNEMPSS PRGVEEVRKV RKERIAPLPP PPPRSRSVRS GSLPPHLSDP SHSPVSERME RSGTGSRQRR ASSTVQKLRL GDHNVVARDR ISNASFMDIE
201: TRSRAETPTG STTVGVKTRL KDCSNALTTS KELLKIINRM WGQEDRPSSS MSLVSALHSE LERARLQVNE VIREHRPENN DVTYLMKRFA EEKAAWKSHE
301: QEVVEAAIES VAGELEVERK LRRRFEGLNK KLGKELSDTK AALMKAVKEI ENEKRARVMV EKVCDELARD ISEDKAEVEE LKRESFKVKE EVEKEREMLQ
401: LADALREERV QMKLSEAKHQ LEEKNAAVDK LRNQLQTYLK AKRCKEKTLE PPQTEEYLNH QHIGFGSYNI EDGEVEDENE EDSGGESDLH SIELNMENKS
501: YKWPYGEDNN RVGRKSTPSK SLSLQRSISD CVDWVVQSEK LQKSGDGGLD WGRSVEVEPK GYLDETQAYK PSKASSKDHL LSGPRLSNFR GGSVSKSRLS
601: DAAKSENQNA RKSRW
101: LWEMNEMPSS PRGVEEVRKV RKERIAPLPP PPPRSRSVRS GSLPPHLSDP SHSPVSERME RSGTGSRQRR ASSTVQKLRL GDHNVVARDR ISNASFMDIE
201: TRSRAETPTG STTVGVKTRL KDCSNALTTS KELLKIINRM WGQEDRPSSS MSLVSALHSE LERARLQVNE VIREHRPENN DVTYLMKRFA EEKAAWKSHE
301: QEVVEAAIES VAGELEVERK LRRRFEGLNK KLGKELSDTK AALMKAVKEI ENEKRARVMV EKVCDELARD ISEDKAEVEE LKRESFKVKE EVEKEREMLQ
401: LADALREERV QMKLSEAKHQ LEEKNAAVDK LRNQLQTYLK AKRCKEKTLE PPQTEEYLNH QHIGFGSYNI EDGEVEDENE EDSGGESDLH SIELNMENKS
501: YKWPYGEDNN RVGRKSTPSK SLSLQRSISD CVDWVVQSEK LQKSGDGGLD WGRSVEVEPK GYLDETQAYK PSKASSKDHL LSGPRLSNFR GGSVSKSRLS
601: DAAKSENQNA RKSRW
001: MPRQNQSVEN LLLLGKIRKR GCSSPTSSTS SILREGYRFK RAIVVGKRGG STTPVPTWRL MGRSPSPRAS GALHAAASPS SHCGSKTGKV SAPAPVSARK
101: LAATLWEMNE MPSPRVVEEA APMIRKSRKE RIAPLPPPRS SVHSGSLPPH LSDPSHSPVS ERMERSGTGS RQRRASSTVQ KLRLGDCNVG ARDPINSGSF
201: MDIETRSRVE TPTGSTVGVK TRLKDCSNAL TTSKELLKII NRMWGQDDRP SSSMSLVSAL HSELERARLQ VNQLIHEHKP ENNDISYLMK RFAEEKAVWK
301: SNEQEVVEAA IESVAGELEV ERKLRRRFES LNKKLGKELA ETKSALMKAV KEIENEKRAR VMVEKVCDEL ARDISEDKAE VEELKRESFK VKEEVEKERE
401: MLQLADALRE ERVQMKLSEA KHQLEEKNAA VDKLRNQLQT YLKAKRCKEK TREPPQTQLH NEEAGDYLNH HISFGSYNIE DGEVENGNEE GSGESDLHSI
501: ELNIDNKSYK WPYGEENRGR KSTPRKSLSL QRSISDCVDW VVQSEKLQKS GDGGLDWGRS IDVEPKGYID ETQAYKPNKA SSKDHHILSG SRLSNFRGGS
601: VSKSRLSDAS KGENQNARKS RW
101: LAATLWEMNE MPSPRVVEEA APMIRKSRKE RIAPLPPPRS SVHSGSLPPH LSDPSHSPVS ERMERSGTGS RQRRASSTVQ KLRLGDCNVG ARDPINSGSF
201: MDIETRSRVE TPTGSTVGVK TRLKDCSNAL TTSKELLKII NRMWGQDDRP SSSMSLVSAL HSELERARLQ VNQLIHEHKP ENNDISYLMK RFAEEKAVWK
301: SNEQEVVEAA IESVAGELEV ERKLRRRFES LNKKLGKELA ETKSALMKAV KEIENEKRAR VMVEKVCDEL ARDISEDKAE VEELKRESFK VKEEVEKERE
401: MLQLADALRE ERVQMKLSEA KHQLEEKNAA VDKLRNQLQT YLKAKRCKEK TREPPQTQLH NEEAGDYLNH HISFGSYNIE DGEVENGNEE GSGESDLHSI
501: ELNIDNKSYK WPYGEENRGR KSTPRKSLSL QRSISDCVDW VVQSEKLQKS GDGGLDWGRS IDVEPKGYID ETQAYKPNKA SSKDHHILSG SRLSNFRGGS
601: VSKSRLSDAS KGENQNARKS RW
Arabidopsis Description
At3g11590/F24K9_26 [Source:UniProtKB/TrEMBL;Acc:Q9CAW9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.