CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY11652
CDY56082
CDY68857

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64180.1	CDY11652	AT1G69810.1	21798944
AT1G64180.1	CDY56082	AT1G69810.1	21798944
AT1G64180.1	CDY68857	AT1G69810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027683.1-P	Field mustard	nucleus	97.22	97.05
CDY25566	Canola	nucleus	94.43	93.78
AT1G64180.1	Thale cress	nucleus	74.96	72.68
CDY39728	Canola	nucleus	59.65	57.55
CDY44461	Canola	nucleus	59.3	56.55
KRH77618	Soybean	nucleus	49.39	42.64
KRH27868	Soybean	nucleus	47.83	41.11
VIT_02s0025g00840.t01	Wine grape	nucleus	47.3	39.94
Solyc08g081830.2.1	Tomato	nucleus, plastid	44.0	37.32
PGSC0003DMT400032084	Potato	nucleus	43.65	37.02
CDX80001	Canola	nucleus	21.04	36.45
CDY42023	Canola	nucleus	24.35	33.49
GSMUA_Achr10P...	Banana	nucleus	36.52	31.16
Os02t0260500-00	Rice	nucleus	25.91	29.98
GSMUA_Achr10P...	Banana	nucleus	34.26	29.89
Zm00001d053356_P002	Maize	nucleus	29.22	26.5
OQU76466	Sorghum	nucleus	32.52	26.23
KXG29970	Sorghum	nucleus	31.83	26.14
CDX80002	Canola	cytosol	2.09	26.09
Zm00001d037050_P001	Maize	nucleus	29.39	25.53
TraesCS7A01G344200.1	Wheat	nucleus	31.48	24.13
TraesCS7D01G335400.1	Wheat	nucleus	31.13	24.06
TraesCS7B01G238900.1	Wheat	nucleus	30.61	23.47
HORVU7Hr1G080670.9	Barley	nucleus, plastid	31.13	21.28
CDX70996	Canola	nucleus	17.39	21.05
CDX88802	Canola	nucleus	16.7	20.51
CDY01038	Canola	plastid	21.04	19.84
CDX73866	Canola	cytosol	12.7	19.78
CDY08511	Canola	plastid	21.04	19.67
CDY56601	Canola	cytosol, golgi, plastid	12.52	19.51
CDX92367	Canola	mitochondrion, plastid	16.17	19.38
CDY67997	Canola	mitochondrion, plastid	15.48	18.9
Os06t0507900-01	Rice	cytosol, nucleus	10.43	18.24
CDY37111	Canola	nucleus	18.96	16.05
CDY22812	Canola	nucleus	17.04	14.85
CDY25414	Canola	mitochondrion	15.65	14.13
CDY29821	Canola	mitochondrion	15.3	13.77

Protein Annotations

EnsemblPlants:CDY34403	EnsemblPlantsGene:GSBRNA2T00056469001	ncoils:Coil	PANTHER:PTHR31071	PANTHER:PTHR31071:SF9	ProteinID:CDY34403
ProteinID:CDY34403.1	SEG:seg	UniParc:UPI0004EF141D	UniProt:A0A078HC97	MapMan:35.1	:

Description

BnaA09g11450DBnaA09g11450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HC97]

Coordinates

chrLK032333:+:303896..306166

Molecular Weight (calculated)

65590.1 Da

IEP (calculated)

9.354

GRAVY (calculated)

-1.044

Length

575 amino acids

Sequence
(BLAST)

001: MKSKEEEEEE EDGGEGQKGK SFIEKLRRRA VSVGHRRVFR SPSTPAHISF NPNNPSSSSK FASSSRKLAA SLWEFYQYYD QDHEIPPLAK MHRAPYSSGG
101: DPSNRRLRHD HGKSAVRDNG ALDLSDDQPE SAGSIRKQIG QMLMKHHQLT QRNDHPLQPL SPASSLEVAP YNGAITPGSS LDLHGRRRAG EPNYNNLKTS
201: TELLKVLNRI WTLEEQHSAN ISLIKALKSE LAHARARIKE LLRCQQADRR EMDELVKQLA EEKLSKDTKE RDRLSSAVQS LEEERKLRRR SESLQRKLAR
301: ELSEVKSTLS HCVDEMERGS KSRKMLERLC DEFARGIKSY EREVHGLKQK VDKSWEGWGE EDQMVLCIAE TWLDERIQSG EEGSVLEKLE LEIEAFLKSK
401: SGNEIPKNHR RSSLESAPFN AMSAPIQEVD SQEEEDSNCF ELKKHGTVET RRSQSPSSLQ VKFEDQMAWA MSNNEKKSKK KSRDIEAEKG EKERSNAVGE
501: MIRTHRRLLS ETQGIDEGSC SYQPSRRAES PIRHWNPRAM TSDLTAQGVK DNTLKAKLSE ARTKSSRPRI RLFKG

Best Arabidopsis Sequence Match ( AT1G64180.1 )
(BLAST)

001: MKSKEEEEEE EEEDDGGEGQ KGKRFIEKLR RRAVFVGHRS VFRRPSTPVH ISFNPNKNPS SASSRKLAAS LWEFYQYYDN DHLIHPPAAT KMHRAPLGSA
101: GPSNSRRLRH GHGKAAVADN NGIELTDHQP ESAGSIRRQI GQMLMKHHHL TERNDHALQP VSPTSYDSSL EFRGRRRAGE PNNNIKTSTE LLKVLNRIWI
201: LEEQHSANIS LIKSLKTELA HSRARIKDLL RCKQADKRDM DDFVKQLAEE KLSKGTKEHD RLSSAVQSLE DERKLRKRSE SLYRKLAQEL SEVKSTLSNC
301: VKEMERGTES KKILERLCDE FAKGIKSYER EIHGLKQKLD KNWKGWDEQD HMILCIAESW LDERIQSGNG SALEKLEFEI ETFLKTNQNA DSNEIARNRR
401: TSLESVPFNA MSAPIWEVDR EEEEDSGGSG SNCFELKKHG SDVAKPPRGD ETEKPELIKV GVSERPQRRS QSPSSLQVKF EDQMAWAMSS NEKKKTRANE
501: MEPETEKCGK ETNNVVGEMI RTHRRLSSET REIDEASCSY PSRRRESPIR QWNTRTVTPD LGAPRGVKDN TLKTKLSEAR TTSSRPRVRL FKD

Arabidopsis Description

Intracellular protein transport protein USO1-like protein [Source:UniProtKB/TrEMBL;Acc:F4I5B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.