CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025484.1-P	Field mustard	nucleus	98.15	98.32
CDY44461	Canola	nucleus	97.15	96.02
AT5G41620.1	Thale cress	nucleus	78.52	75.12
CDY34403	Canola	nucleus	57.55	59.65
CDY25566	Canola	nucleus	57.21	58.89
KRH77618	Soybean	nucleus	51.01	45.65
KRH27868	Soybean	nucleus	49.5	44.1
VIT_02s0025g00840.t01	Wine grape	nucleus	48.32	42.29
PGSC0003DMT400032084	Potato	nucleus	45.47	39.97
Solyc08g081830.2.1	Tomato	nucleus, plastid	44.97	39.53
CDX80001	Canola	nucleus	20.81	37.35
CDY42023	Canola	nucleus	23.32	33.25
GSMUA_Achr10P...	Banana	nucleus	36.07	31.9
Os02t0260500-00	Rice	nucleus	26.51	31.79
GSMUA_Achr10P...	Banana	nucleus	33.72	30.5
Zm00001d053356_P002	Maize	nucleus	28.86	27.13
KXG29970	Sorghum	nucleus	31.71	27.0
OQU76466	Sorghum	nucleus	31.38	26.23
Zm00001d037050_P001	Maize	nucleus	27.35	24.62
TraesCS7A01G344200.1	Wheat	nucleus	30.54	24.27
TraesCS7D01G335400.1	Wheat	nucleus	30.2	24.19
TraesCS7B01G238900.1	Wheat	nucleus	29.7	23.6
HORVU7Hr1G080670.9	Barley	nucleus, plastid	30.03	21.28
CDX70996	Canola	nucleus	16.61	20.84
CDX88802	Canola	nucleus	16.11	20.51
CDY01038	Canola	plastid	20.81	20.33
CDY08511	Canola	plastid	20.81	20.16
CDX73866	Canola	cytosol	12.25	19.78
Os06t0507900-01	Rice	cytosol, nucleus	10.91	19.76
CDY56601	Canola	cytosol, golgi, plastid	12.08	19.51
CDX92367	Canola	mitochondrion, plastid	15.6	19.38
CDY67997	Canola	mitochondrion, plastid	14.77	18.68
CDX80002	Canola	cytosol	1.34	17.39
CDY37111	Canola	nucleus	18.46	16.2
CDY22812	Canola	nucleus	16.61	15.0
CDY25414	Canola	mitochondrion	15.1	14.13
CDY29821	Canola	mitochondrion	15.1	14.08

Protein Annotations

EnsemblPlants:CDY39728	EnsemblPlantsGene:GSBRNA2T00068507001	ncoils:Coil	PANTHER:PTHR31071	PANTHER:PTHR31071:SF9	ProteinID:CDY39728
ProteinID:CDY39728.1	SEG:seg	UniParc:UPI0004EE8CF9	UniProt:A0A078HSJ8	MapMan:35.1	:

Description

BnaA04g11250DBnaA04g11250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSJ8]

Coordinates

chrLK032456:-:44428..52091

Molecular Weight (calculated)

67706.4 Da

IEP (calculated)

8.151

GRAVY (calculated)

-0.956

Length

596 amino acids

Sequence
(BLAST)

001: MESKVTGEEE ERGERQKVER LVEKLKNYTT TTKNNNNGDG PSTPVHVSFS GSSKLFSPSD VVSSRKLAAA FWEFYHYYCY QEEDRSFFSP PPAAAEMHRR
101: QRHGKAVVKE NGLDLSQFLR DPSPDHQPES AGSLRRQIGQ VLMKHHQSLE RNNHALQPVS PASYGSSLEV APYNKAVTPS SSLEFRGRQS REPQYNLKTS
201: TELLKVLNRI WSLEEQHAAN ISLIKSLKTE LAHSRVRIKE LLRYQQADRH ELNGVVKQLA EENLSRKNKE VERIQSVRKE LEDERKLRKR SESMQRKLAR
301: ELSEVKSSLS ECVKEVERGN KSKKMVEILC DEFAKGIKSY EEEFHGLRHK NGAGREERDQ MVLHIAESWL DERMQMRLEG GGEDVLDKLG VEIETFLQAK
401: RRSSLESVPF NALSAPPRDV ECEEDSGASD SNCFELKKPV ESHVNETETN KDDEKPKGML GSPSSFQVKF EDQMAWAMSS NGKKKTQTIK EEDDDAEPEK
501: NKQENETTNK NDVMGEMIRT HRRLLSETGE ASCSSYPSSW RQASPVRQWS SRTVTGELLG SSETSAAIGI AQGVKDNTLK TKLAKSSKSR LRLFKG

Best Arabidopsis Sequence Match ( AT5G41620.1 )
(BLAST)

001: MESKVRGEEE RQKVERLVEK LKVHNNNNNR SSTPAHISFV PNSIVVSSRK LAAAFWEFHQ YHYKDEEDCS YSYLSSASAK MHRGPNGFAG ASSRRQRHGK
101: AVAVKENGLD LSQFLRDPSP DHQPDSAGSL RRQIGQMLIK HHQSIDRNNH ALQPVSPASY GSSLEVTTYN KAVTPSSSLE FRGRPSREPH YNLKTSTELL
201: KVLNRIWSLE EQHVSNISLI KALKTEVAHS RVRIKELLRY QQADRHELDS VVKQLAEEKL LSKNKEVERM SSAVQSVRKA LEDERKLRKR SESLHRKMAR
301: ELSEVKSSLS NCVKELERGS KSNKMMELLC DEFAKGIKSY EEEIHGLKKK NLDKDWAGRG GGDQLVLHIA ESWLDERMQM RLEGGDTLNG KNRSVLDKLE
401: VEIETFLQEK RNEIPRNRRN SLESVPFNTL SAPPRDVDCE EDSGGSDSNC FELKKPAESY GDETKKPNQH NKDGSIDEKP KSPSSFQVNF EDQMAWALSS
501: NGKKKTTRAI EDEEEEEDVK PENSNNNKKP ENECATTNKN DVMGEMIRTH RRLLSETREI DEASCNFPSS RRQASPVRQW ISRTVAPDLL GPSEIAIAHG
601: VKDNTLKTKL ANSSKSRLRL FKG

Arabidopsis Description

Uncharacterized protein At5g41620 [Source:UniProtKB/Swiss-Prot;Acc:Q66GQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.