Factsheet for Bra025484.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39728	Canola	nucleus	98.32	98.15
AT5G41620.1	Thale cress	nucleus	77.98	74.48
Bra027683.1-P	Field mustard	nucleus	56.47	58.33
KRH77618	Soybean	nucleus	50.59	45.2
KRH27868	Soybean	nucleus	49.08	43.65
VIT_02s0025g00840.t01	Wine grape	nucleus	47.9	41.85
PGSC0003DMT400032084	Potato	nucleus	46.05	40.41
Solyc08g081830.2.1	Tomato	nucleus, plastid	45.71	40.12
Bra004552.1-P	Field mustard	nucleus	22.69	32.77
Os02t0260500-00	Rice	nucleus	26.55	31.79
GSMUA_Achr10P...	Banana	nucleus	35.97	31.75
GSMUA_Achr10P...	Banana	nucleus	33.78	30.5
Zm00001d053356_P002	Maize	nucleus	28.74	26.97
KXG29970	Sorghum	nucleus	31.6	26.86
OQU76466	Sorghum	nucleus	31.6	26.37
Zm00001d037050_P001	Maize	nucleus	27.56	24.77
TraesCS7A01G344200.1	Wheat	nucleus	30.59	24.27
TraesCS7D01G335400.1	Wheat	nucleus	30.08	24.06
TraesCS7B01G238900.1	Wheat	nucleus	29.58	23.47
Bra006620.1-P	Field mustard	nucleus	16.64	21.95
HORVU7Hr1G080670.9	Barley	nucleus, plastid	30.25	21.4
Bra001412.1-P	Field mustard	nucleus	12.27	21.04
Bra034827.1-P	Field mustard	plastid	20.67	20.03
Os06t0507900-01	Rice	cytosol, nucleus	10.59	19.15
Bra002404.1-P	Field mustard	nucleus	15.46	19.01
Bra018866.1-P	Field mustard	nucleus	17.65	15.6
Bra035788.1-P	Field mustard	mitochondrion	14.96	13.97

Protein Annotations

EnsemblPlants:Bra025484.1	EnsemblPlants:Bra025484.1-P	EnsemblPlantsGene:Bra025484	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005886	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	ncoils:Coil
PANTHER:PTHR31071	PANTHER:PTHR31071:SF9	SEG:seg	UniParc:UPI000254546D	UniProt:M4E9M8	MapMan:35.1

Description

AT5G41620 (E=1e-210) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 2568 Blast hits to 2157 proteins in 267 species: Archae - 27; Bacteria - 258; Metazoa - 955; Fungi - 181; Plants - 134; Viruses - 0; Other Eukaryotes - 1013 (source: NCBI BLink).

Coordinates

chrA04:+:8440739..8443134

Molecular Weight (calculated)

67477.2 Da

IEP (calculated)

8.358

GRAVY (calculated)

-0.954

Length

595 amino acids

Sequence
(BLAST)

001: MESKVTGGEE ERGERQKVER LVEKLKNYTT TKNNNNGDGP STPVHVSFSG SSKLFSPSDV VSSRKLAAAF WEFHHYYCYQ EEDRSFFSPP PAAAEMHRRQ
101: RHGKAVVKEN GLDLSQFLRD PSPDHQPESA GSLRRQIGQV LMKHHQSLER NNHALQPVSP ASYGSSLEVA PYNKAVTPSS SLEFRGRQSR EPQYNLKTST
201: ELLKVLNRIW SLEEQHAANI SLIKSLKTEL AHSRVRIKEL LRYQQADRHE LNGVVKQLTE ENLSRKNKEA ERIQSVRKEL EDERKLRKRS ESMQRKLARE
301: LSEVKSSLSE CVKEVERGNK SKKMVEILCD EFAKGIKSYE EEFHGLRHKN GAGREERDQM VLHIAESWLD ERMQMRLEGG GEDVLDKLGV EIETFLQAKR
401: RSSLESVPFN ALSAPPHDVE CEEDSGASDS NCFELKKPVE SHVNETETNK DDEKPKGMIG SPSSFQVKFE DQMAWAMSSN GKKKTKTIKE EDDDAEPEKN
501: KQENETTSKN DVMGEMIRTH RRLLSETGEA SCSSYPSSWR QASPVRQWTS RTVTGEILGS SETSAAIGIA QGVKDNTLKT KLAKSSKSRL RLFKG

Best Arabidopsis Sequence Match ( AT5G41620.1 )
(BLAST)

001: MESKVRGEEE RQKVERLVEK LKVHNNNNNR SSTPAHISFV PNSIVVSSRK LAAAFWEFHQ YHYKDEEDCS YSYLSSASAK MHRGPNGFAG ASSRRQRHGK
101: AVAVKENGLD LSQFLRDPSP DHQPDSAGSL RRQIGQMLIK HHQSIDRNNH ALQPVSPASY GSSLEVTTYN KAVTPSSSLE FRGRPSREPH YNLKTSTELL
201: KVLNRIWSLE EQHVSNISLI KALKTEVAHS RVRIKELLRY QQADRHELDS VVKQLAEEKL LSKNKEVERM SSAVQSVRKA LEDERKLRKR SESLHRKMAR
301: ELSEVKSSLS NCVKELERGS KSNKMMELLC DEFAKGIKSY EEEIHGLKKK NLDKDWAGRG GGDQLVLHIA ESWLDERMQM RLEGGDTLNG KNRSVLDKLE
401: VEIETFLQEK RNEIPRNRRN SLESVPFNTL SAPPRDVDCE EDSGGSDSNC FELKKPAESY GDETKKPNQH NKDGSIDEKP KSPSSFQVNF EDQMAWALSS
501: NGKKKTTRAI EDEEEEEDVK PENSNNNKKP ENECATTNKN DVMGEMIRTH RRLLSETREI DEASCNFPSS RRQASPVRQW ISRTVAPDLL GPSEIAIAHG
601: VKDNTLKTKL ANSSKSRLRL FKG

Arabidopsis Description

Uncharacterized protein At5g41620 [Source:UniProtKB/Swiss-Prot;Acc:Q66GQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.