Factsheet for VIT_02s0025g00840.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77618	Soybean	nucleus	59.03	60.36
KRH27868	Soybean	nucleus	58.3	59.34
VIT_15s0046g01530.t01	Wine grape	mitochondrion	57.42	59.33
PGSC0003DMT400032084	Potato	nucleus	53.89	54.13
Solyc08g081830.2.1	Tomato	nucleus, plastid	53.45	53.69
AT5G41620.1	Thale cress	nucleus	44.79	48.96
CDY39728	Canola	nucleus	42.29	48.32
Bra025484.1-P	Field mustard	nucleus	41.85	47.9
CDY34403	Canola	nucleus	39.94	47.3
CDY44461	Canola	nucleus	41.85	47.26
Bra027683.1-P	Field mustard	nucleus	39.94	47.22
CDY25566	Canola	nucleus	39.35	46.29
AT1G64180.1	Thale cress	nucleus	38.91	44.69
GSMUA_Achr10P...	Banana	nucleus	41.7	42.14
GSMUA_Achr10P...	Banana	nucleus	38.47	39.76
Os02t0260500-00	Rice	nucleus	27.75	38.03
Zm00001d053356_P002	Maize	nucleus	31.13	33.44
OQU76466	Sorghum	nucleus	34.21	32.68
KXG29970	Sorghum	nucleus	33.48	32.57
Zm00001d037050_P001	Maize	nucleus	31.57	32.48
TraesCS7A01G344200.1	Wheat	nucleus	32.89	29.87
TraesCS7D01G335400.1	Wheat	nucleus	32.31	29.57
TraesCS7B01G238900.1	Wheat	nucleus	32.45	29.47
Os06t0507900-01	Rice	cytosol, nucleus	13.22	27.36
HORVU7Hr1G080670.9	Barley	nucleus, plastid	32.89	26.64
VIT_06s0080g00930.t01	Wine grape	plastid	23.94	25.0
VIT_08s0007g02790.t01	Wine grape	plastid	23.94	24.77
VIT_19s0090g00370.t01	Wine grape	plastid	19.82	18.83
VIT_10s0116g01830.t01	Wine grape	nucleus	20.26	18.72

Protein Annotations

EntrezGene:100258622	wikigene:100258622	MapMan:35.1	ProteinID:CCB58219	ProteinID:CCB58219.1	ncoils:Coil
UniProt:F6HUQ3	EMBL:FN596251	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EntrezGene:LOC100258622	wikigene:LOC100258622	PANTHER:PTHR31071	PANTHER:PTHR31071:SF9	TIGR:TC53020
UniParc:UPI0001982A80	ArrayExpress:VIT_02s0025g00840	EnsemblPlantsGene:VIT_02s0025g00840	EnsemblPlants:VIT_02s0025g00840.t01	unigene:Vvi.5288	RefSeq:XP_002276152
RefSeq:XP_002276152.2	RefSeq:XP_002276152.3	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:+:839782..844943

Molecular Weight (calculated)

76720.8 Da

IEP (calculated)

9.586

GRAVY (calculated)

-0.876

Length

681 amino acids

Sequence
(BLAST)

001: MKRGEKSEEE IAEKKENLGV KVRKRVLVGK RAGPSTPSPA WRLGPAQDSI IVNKGASIFS ARKLAATLWE IHHFLPLAKM HRGGGGGGPP PPPPLKLRHR
101: HHLHYRDKGL DLPTLLTDPF PTSPDQPASA SSLRRHVATT LMQHRRANER NSRALQPVSP ASYGSSLEVG PYNPAVTPTS SLDFKGGIGE SSYSLKTSTD
201: LLKVLNRIWS LEEQHASNVS LIKALKMELG HARARIKRLL RDQQAERHEI DDLMKQVEDK LLRKSSKEQD RVNSAVQSVR DELENERKLR KHSESLHRKL
301: ARELSEVKSS FSNALKELEK ERKSRELLED LCDEFAKGIR DYQQEVHALK QKSDSDWAGR ADHDRLILHL SESWLDERMQ TKLVETQLGS AENNPILDKL
401: SFEIETFLQA KQMHTSKTNS NMLPREPTKE RYLRRNSLES VPLHDAVSAP QDAGDEEASA GSDTNCFELN KPTTSNFKPH GDEPEAHTDR MIKSKKKLVP
501: HERIKGRNPS SLQVKFEEQM ARAMACNGNK TTQVVDTDQQ RKISEGIPLE ASITPKPENC EATEDRSYER KIKHDAIIQE PNLNYDIDSL IRSQYLSSEA
601: GNIRPENDDD CCEASFGNSA WRSHGSPVRE WMVKLTSPDL DIPESSSKLA PKENTLKAKL LEARLKGKRS RLKATNTKGS L

Best Arabidopsis Sequence Match ( AT5G41620.1 )
(BLAST)

001: MESKVRGEEE RQKVERLVEK LKVHNNNNNR SSTPAHISFV PNSIVVSSRK LAAAFWEFHQ YHYKDEEDCS YSYLSSASAK MHRGPNGFAG ASSRRQRHGK
101: AVAVKENGLD LSQFLRDPSP DHQPDSAGSL RRQIGQMLIK HHQSIDRNNH ALQPVSPASY GSSLEVTTYN KAVTPSSSLE FRGRPSREPH YNLKTSTELL
201: KVLNRIWSLE EQHVSNISLI KALKTEVAHS RVRIKELLRY QQADRHELDS VVKQLAEEKL LSKNKEVERM SSAVQSVRKA LEDERKLRKR SESLHRKMAR
301: ELSEVKSSLS NCVKELERGS KSNKMMELLC DEFAKGIKSY EEEIHGLKKK NLDKDWAGRG GGDQLVLHIA ESWLDERMQM RLEGGDTLNG KNRSVLDKLE
401: VEIETFLQEK RNEIPRNRRN SLESVPFNTL SAPPRDVDCE EDSGGSDSNC FELKKPAESY GDETKKPNQH NKDGSIDEKP KSPSSFQVNF EDQMAWALSS
501: NGKKKTTRAI EDEEEEEDVK PENSNNNKKP ENECATTNKN DVMGEMIRTH RRLLSETREI DEASCNFPSS RRQASPVRQW ISRTVAPDLL GPSEIAIAHG
601: VKDNTLKTKL ANSSKSRLRL FKG

Arabidopsis Description

Uncharacterized protein At5g41620 [Source:UniProtKB/Swiss-Prot;Acc:Q66GQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.