Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34403 | Canola | nucleus | 72.68 | 74.96 |
| CDY25566 | Canola | nucleus | 73.02 | 74.78 |
| Bra027683.1-P | Field mustard | nucleus | 72.51 | 74.65 |
| AT5G41620.1 | Thale cress | nucleus | 61.72 | 58.75 |
| KRH77618 | Soybean | nucleus | 46.54 | 41.44 |
| KRH27868 | Soybean | nucleus | 44.86 | 39.76 |
| VIT_02s0025g00840.t01 | Wine grape | nucleus | 44.69 | 38.91 |
| Solyc08g081830.2.1 | Tomato | nucleus, plastid | 41.32 | 36.14 |
| PGSC0003DMT400032084 | Potato | nucleus | 40.98 | 35.84 |
| AT2G46250.1 | Thale cress | nucleus | 24.28 | 30.77 |
| GSMUA_Achr10P... | Banana | nucleus | 34.23 | 30.12 |
| GSMUA_Achr10P... | Banana | nucleus | 31.87 | 28.68 |
| Os02t0260500-00 | Rice | nucleus | 23.61 | 28.17 |
| Zm00001d053356_P002 | Maize | nucleus | 27.49 | 25.71 |
| KXG29970 | Sorghum | nucleus | 30.19 | 25.57 |
| OQU76466 | Sorghum | nucleus | 30.52 | 25.39 |
| Zm00001d037050_P001 | Maize | nucleus | 27.49 | 24.62 |
| TraesCS7A01G344200.1 | Wheat | nucleus | 30.02 | 23.73 |
| TraesCS7D01G335400.1 | Wheat | nucleus | 29.34 | 23.39 |
| TraesCS7B01G238900.1 | Wheat | nucleus | 29.17 | 23.07 |
| HORVU7Hr1G080670.9 | Barley | nucleus, plastid | 29.85 | 21.05 |
| Os06t0507900-01 | Rice | cytosol, nucleus | 10.96 | 19.76 |
| AT5G22310.1 | Thale cress | nucleus | 15.51 | 19.13 |
| AT3G11590.1 | Thale cress | plastid | 18.89 | 18.01 |
| AT1G50660.1 | Thale cress | nucleus | 19.56 | 16.0 |
| AT3G20350.1 | Thale cress | plastid | 17.54 | 15.45 |
Protein Annotations
| MapMan:35.1 | EntrezGene:842722 | ProteinID:AEE34205.1 | ArrayExpress:AT1G64180 | EnsemblPlantsGene:AT1G64180 | RefSeq:AT1G64180 |
| TAIR:AT1G64180 | RefSeq:AT1G64180-TAIR-G | EnsemblPlants:AT1G64180.1 | TAIR:AT1G64180.1 | Unigene:At.26404 | ncoils:Coil |
| UniProt:F4I5B1 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0009506 | GO:GO:0016020 |
| RefSeq:NP_564826.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PANTHER:PTHR31071 | PANTHER:PTHR31071:SF9 | UniParc:UPI0000163205 | SEG:seg | : |
Description
Intracellular protein transport protein USO1-like protein [Source:UniProtKB/TrEMBL;Acc:F4I5B1]
Coordinates
chr1:+:23821453..23824359
Molecular Weight (calculated)
67943.8 Da
IEP (calculated)
9.247
GRAVY (calculated)
-1.068
Length
593 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSKEEEEEE EEEDDGGEGQ KGKRFIEKLR RRAVFVGHRS VFRRPSTPVH ISFNPNKNPS SASSRKLAAS LWEFYQYYDN DHLIHPPAAT KMHRAPLGSA
101: GPSNSRRLRH GHGKAAVADN NGIELTDHQP ESAGSIRRQI GQMLMKHHHL TERNDHALQP VSPTSYDSSL EFRGRRRAGE PNNNIKTSTE LLKVLNRIWI
201: LEEQHSANIS LIKSLKTELA HSRARIKDLL RCKQADKRDM DDFVKQLAEE KLSKGTKEHD RLSSAVQSLE DERKLRKRSE SLYRKLAQEL SEVKSTLSNC
301: VKEMERGTES KKILERLCDE FAKGIKSYER EIHGLKQKLD KNWKGWDEQD HMILCIAESW LDERIQSGNG SALEKLEFEI ETFLKTNQNA DSNEIARNRR
401: TSLESVPFNA MSAPIWEVDR EEEEDSGGSG SNCFELKKHG SDVAKPPRGD ETEKPELIKV GVSERPQRRS QSPSSLQVKF EDQMAWAMSS NEKKKTRANE
501: MEPETEKCGK ETNNVVGEMI RTHRRLSSET REIDEASCSY PSRRRESPIR QWNTRTVTPD LGAPRGVKDN TLKTKLSEAR TTSSRPRVRL FKD
101: GPSNSRRLRH GHGKAAVADN NGIELTDHQP ESAGSIRRQI GQMLMKHHHL TERNDHALQP VSPTSYDSSL EFRGRRRAGE PNNNIKTSTE LLKVLNRIWI
201: LEEQHSANIS LIKSLKTELA HSRARIKDLL RCKQADKRDM DDFVKQLAEE KLSKGTKEHD RLSSAVQSLE DERKLRKRSE SLYRKLAQEL SEVKSTLSNC
301: VKEMERGTES KKILERLCDE FAKGIKSYER EIHGLKQKLD KNWKGWDEQD HMILCIAESW LDERIQSGNG SALEKLEFEI ETFLKTNQNA DSNEIARNRR
401: TSLESVPFNA MSAPIWEVDR EEEEDSGGSG SNCFELKKHG SDVAKPPRGD ETEKPELIKV GVSERPQRRS QSPSSLQVKF EDQMAWAMSS NEKKKTRANE
501: MEPETEKCGK ETNNVVGEMI RTHRRLSSET REIDEASCSY PSRRRESPIR QWNTRTVTPD LGAPRGVKDN TLKTKLSEAR TTSSRPRVRL FKD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.