Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80001 | Canola | nucleus | 51.5 | 72.59 |
| Bra004552.1-P | Field mustard | nucleus | 63.46 | 72.09 |
| CDY42023 | Canola | nucleus | 63.03 | 70.57 |
| CDX80002 | Canola | cytosol | 6.41 | 65.22 |
| AT5G41620.1 | Thale cress | nucleus | 32.48 | 24.4 |
| AT1G64180.1 | Thale cress | nucleus | 30.77 | 24.28 |
| AT3G11590.1 | Thale cress | plastid | 24.79 | 18.65 |
| AT5G22310.1 | Thale cress | nucleus | 17.95 | 17.46 |
| AT1G50660.1 | Thale cress | nucleus | 22.44 | 14.48 |
| AT3G20350.1 | Thale cress | plastid | 18.16 | 12.63 |
Protein Annotations
| MapMan:35.1 | EntrezGene:819233 | ProteinID:AAC62881.1 | ProteinID:AEC10665.1 | EMBL:AK176841 | ArrayExpress:AT2G46250 |
| EnsemblPlantsGene:AT2G46250 | RefSeq:AT2G46250 | TAIR:AT2G46250 | RefSeq:AT2G46250-TAIR-G | EnsemblPlants:AT2G46250.1 | TAIR:AT2G46250.1 |
| EMBL:AY078925 | Unigene:At.36534 | ncoils:Coil | RefSeq:NP_182148.1 | UniProt:O82344 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR31071 | PANTHER:PTHR31071:SF4 |
| UniParc:UPI00000A1462 | SEG:seg | : | : | : | : |
Description
At2g46250/T3F17.10 [Source:UniProtKB/TrEMBL;Acc:O82344]
Coordinates
chr2:+:18991171..18993371
Molecular Weight (calculated)
54195.4 Da
IEP (calculated)
10.112
GRAVY (calculated)
-1.055
Length
468 amino acids
Sequence
(BLAST)
(BLAST)
001: MERECEEGEM EKKLRRSFMG YTRRAGPSTP PPTWRLEFSP PRVGATKEFL ANSEDSVRKL CADLWETEQF RQRIELRRCR RRDSDVESHS RSPLHDHPPS
101: RASLRRQIAA TDDYRNGDLL QPISPASCSS SSSSLQVVVR KPAFSQTGSS AVKSASYGLG SSTKLLKVLN RIWSLEEQNT ANMSLVRALK MELDECRAEI
201: KEVQQRKKLS DRPLRKKKEE EEVKDVFRSI KRELDDERKV RKESETLHRK LTRELCEAKH CLSKALKDLE KETQERVVVE NLCDEFAKAV KDYEDKVRRI
301: GKKSPVSDKV IVQIAEVWSD QRLQMKLEED DKTFLLRAKE KSRSQSSKGS GLRAKPDDSV SMHQRVCLKE LEEGLEKRTR RDNKLQLKKS SGQVLNLSMS
401: SEGDKIHPES SPRNVDDHES QEKSRTFSKN HPRNVNVMIR EDNHRTLKDK LMEARVESRR LRSSLKPE
101: RASLRRQIAA TDDYRNGDLL QPISPASCSS SSSSLQVVVR KPAFSQTGSS AVKSASYGLG SSTKLLKVLN RIWSLEEQNT ANMSLVRALK MELDECRAEI
201: KEVQQRKKLS DRPLRKKKEE EEVKDVFRSI KRELDDERKV RKESETLHRK LTRELCEAKH CLSKALKDLE KETQERVVVE NLCDEFAKAV KDYEDKVRRI
301: GKKSPVSDKV IVQIAEVWSD QRLQMKLEED DKTFLLRAKE KSRSQSSKGS GLRAKPDDSV SMHQRVCLKE LEEGLEKRTR RDNKLQLKKS SGQVLNLSMS
401: SEGDKIHPES SPRNVDDHES QEKSRTFSKN HPRNVNVMIR EDNHRTLKDK LMEARVESRR LRSSLKPE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.