CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004552.1-P	Field mustard	nucleus	98.8	79.61
CDY42023	Canola	nucleus	95.78	76.08
AT2G46250.1	Thale cress	nucleus	72.59	51.5
CDY34403	Canola	nucleus	36.45	21.04
CDY39728	Canola	nucleus	37.35	20.81
CDY25566	Canola	nucleus	36.14	20.73
CDY44461	Canola	nucleus	37.05	20.4
CDX70996	Canola	nucleus	21.69	15.16
CDY67997	Canola	mitochondrion, plastid	21.08	14.86
CDX88802	Canola	nucleus	20.48	14.53
CDY01038	Canola	plastid	26.51	14.43
CDX92367	Canola	mitochondrion, plastid	20.78	14.38
CDY08511	Canola	plastid	26.51	14.31
CDY56601	Canola	cytosol, golgi, plastid	13.25	11.92
CDX73866	Canola	cytosol	13.25	11.92
CDY37111	Canola	nucleus	21.08	10.31
CDY22812	Canola	nucleus	19.88	10.0
CDY25414	Canola	mitochondrion	16.87	8.79
CDY29821	Canola	mitochondrion	16.87	8.76
CDX80002	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX80001	EnsemblPlantsGene:GSBRNA2T00132873001	ncoils:Coil	PANTHER:PTHR31071	PANTHER:PTHR31071:SF4	ProteinID:CDX80001
ProteinID:CDX80001.1	SEG:seg	UniParc:UPI0004EE43B6	MapMan:35.1	:	:

Description

BnaA05g01550D

Coordinates

chrLK031819:+:1240063..1241312

Molecular Weight (calculated)

38565.7 Da

IEP (calculated)

9.295

GRAVY (calculated)

-1.111

Length

332 amino acids

Sequence
(BLAST)

001: MERECEGEGD IEKKLRRSFY MGNCSKRAGP STPPPTWRLG ASSSKEFLVN SDVSVRKLCA ELWETEHFRP PVGLPRCRRR DSDVDSPCDH QPPSRGTSLR
101: RQVDDHRLVQ RHGDLLQPIT PSSSSNHSLE VVKRKPAFSQ TGSSMAAKSA SYGLGSSTKL LKVLNRIWSL EEQNTANTSL VKALKMELDE CRAEIKEVQH
201: REKQSYRRVC KKKEEEEEEI KDVLRSMKKE LDEEREVRKK SESMHRKLTR ELCEAKHCLT KALKDLENER KERVVVEDLC DEFAKTVKDY EDKERRRRSH
301: SSQSDSGYVH QRVCLKELEE GLKRRSRRDN KL

Best Arabidopsis Sequence Match ( AT2G46250.1 )
(BLAST)

001: MERECEEGEM EKKLRRSFMG YTRRAGPSTP PPTWRLEFSP PRVGATKEFL ANSEDSVRKL CADLWETEQF RQRIELRRCR RRDSDVESHS RSPLHDHPPS
101: RASLRRQIAA TDDYRNGDLL QPISPASCSS SSSSLQVVVR KPAFSQTGSS AVKSASYGLG SSTKLLKVLN RIWSLEEQNT ANMSLVRALK MELDECRAEI
201: KEVQQRKKLS DRPLRKKKEE EEVKDVFRSI KRELDDERKV RKESETLHRK LTRELCEAKH CLSKALKDLE KETQERVVVE NLCDEFAKAV KDYEDKVRRI
301: GKKSPVSDKV IVQIAEVWSD QRLQMKLEED DKTFLLRAKE KSRSQSSKGS GLRAKPDDSV SMHQRVCLKE LEEGLEKRTR RDNKLQLKKS SGQVLNLSMS
401: SEGDKIHPES SPRNVDDHES QEKSRTFSKN HPRNVNVMIR EDNHRTLKDK LMEARVESRR LRSSLKPE

Arabidopsis Description

At2g46250/T3F17.10 [Source:UniProtKB/TrEMBL;Acc:O82344]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.