Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80001 | Canola | nucleus | 76.08 | 95.78 |
| Bra004552.1-P | Field mustard | nucleus | 93.06 | 94.42 |
| CDX80002 | Canola | cytosol | 10.29 | 93.48 |
| AT2G46250.1 | Thale cress | nucleus | 70.57 | 63.03 |
| CDY34403 | Canola | nucleus | 33.49 | 24.35 |
| CDY25566 | Canola | nucleus | 33.01 | 23.83 |
| CDY39728 | Canola | nucleus | 33.25 | 23.32 |
| CDY44461 | Canola | nucleus | 32.78 | 22.72 |
| CDY01038 | Canola | plastid | 23.68 | 16.23 |
| CDY08511 | Canola | plastid | 23.68 | 16.1 |
| CDX70996 | Canola | nucleus | 17.7 | 15.58 |
| CDY67997 | Canola | mitochondrion, plastid | 16.99 | 15.07 |
| CDX88802 | Canola | nucleus | 16.75 | 14.96 |
| CDX92367 | Canola | mitochondrion, plastid | 16.99 | 14.79 |
| CDY56601 | Canola | cytosol, golgi, plastid | 12.2 | 13.82 |
| CDX73866 | Canola | cytosol | 11.72 | 13.28 |
| CDY37111 | Canola | nucleus | 21.29 | 13.11 |
| CDY22812 | Canola | nucleus | 20.33 | 12.88 |
| CDY25414 | Canola | mitochondrion | 16.51 | 10.83 |
| CDY29821 | Canola | mitochondrion | 16.27 | 10.64 |
Protein Annotations
| EnsemblPlants:CDY42023 | EnsemblPlantsGene:GSBRNA2T00074036001 | ncoils:Coil | PANTHER:PTHR31071 | PANTHER:PTHR31071:SF4 | ProteinID:CDY42023 |
| ProteinID:CDY42023.1 | SEG:seg | UniParc:UPI0004EE604F | UniProt:A0A078HZ97 | MapMan:35.1 | : |
Description
BnaC04g01010DBnaC04g01010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZ97]
Coordinates
chrLK032512:+:82047..83923
Molecular Weight (calculated)
48205.1 Da
IEP (calculated)
9.767
GRAVY (calculated)
-1.074
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MERECEEGGD TERKLRRSFL VGNHSKRAGP STPPPTWRLG LSPPRLGASS SKEFLVSADV SVRKLCAELW ETEHFRPPAG LPRCRRRDSD VESPCDHQPP
101: SRGTSLRRQI DDHRLVQRHG DLLQPITPSS SSNHSLEVVK RKPAFSQTGS SMAAKSASYG LGSSTKLLKV LNRIWSLEEQ NTANTSLVKA LKMELDECRA
201: EIKEVQHREK QSYRRVCKKK EEEEEEIKDV LRSMKKELDE EREVRKKSES MHRKLTRELC EAKHCLTQAL KDLENERKER VVVEDLCDEF AKTVKDYEDK
301: ERRRRSHSSQ SDSGYIHQRV CLKELEEGLK RRSRRDNKLQ LKRSDQVSKL SLSSEGDKIH PETSTPRNVD DLEMSTTFSK NVMVREESRS LKDKLMEARV
401: ESRRLRSLKS TPSHPVQA
101: SRGTSLRRQI DDHRLVQRHG DLLQPITPSS SSNHSLEVVK RKPAFSQTGS SMAAKSASYG LGSSTKLLKV LNRIWSLEEQ NTANTSLVKA LKMELDECRA
201: EIKEVQHREK QSYRRVCKKK EEEEEEIKDV LRSMKKELDE EREVRKKSES MHRKLTRELC EAKHCLTQAL KDLENERKER VVVEDLCDEF AKTVKDYEDK
301: ERRRRSHSSQ SDSGYIHQRV CLKELEEGLK RRSRRDNKLQ LKRSDQVSKL SLSSEGDKIH PETSTPRNVD DLEMSTTFSK NVMVREESRS LKDKLMEARV
401: ESRRLRSLKS TPSHPVQA
001: MERECEEGEM EKKLRRSFMG YTRRAGPSTP PPTWRLEFSP PRVGATKEFL ANSEDSVRKL CADLWETEQF RQRIELRRCR RRDSDVESHS RSPLHDHPPS
101: RASLRRQIAA TDDYRNGDLL QPISPASCSS SSSSLQVVVR KPAFSQTGSS AVKSASYGLG SSTKLLKVLN RIWSLEEQNT ANMSLVRALK MELDECRAEI
201: KEVQQRKKLS DRPLRKKKEE EEVKDVFRSI KRELDDERKV RKESETLHRK LTRELCEAKH CLSKALKDLE KETQERVVVE NLCDEFAKAV KDYEDKVRRI
301: GKKSPVSDKV IVQIAEVWSD QRLQMKLEED DKTFLLRAKE KSRSQSSKGS GLRAKPDDSV SMHQRVCLKE LEEGLEKRTR RDNKLQLKKS SGQVLNLSMS
401: SEGDKIHPES SPRNVDDHES QEKSRTFSKN HPRNVNVMIR EDNHRTLKDK LMEARVESRR LRSSLKPE
101: RASLRRQIAA TDDYRNGDLL QPISPASCSS SSSSLQVVVR KPAFSQTGSS AVKSASYGLG SSTKLLKVLN RIWSLEEQNT ANMSLVRALK MELDECRAEI
201: KEVQQRKKLS DRPLRKKKEE EEVKDVFRSI KRELDDERKV RKESETLHRK LTRELCEAKH CLSKALKDLE KETQERVVVE NLCDEFAKAV KDYEDKVRRI
301: GKKSPVSDKV IVQIAEVWSD QRLQMKLEED DKTFLLRAKE KSRSQSSKGS GLRAKPDDSV SMHQRVCLKE LEEGLEKRTR RDNKLQLKKS SGQVLNLSMS
401: SEGDKIHPES SPRNVDDHES QEKSRTFSKN HPRNVNVMIR EDNHRTLKDK LMEARVESRR LRSSLKPE
Arabidopsis Description
At2g46250/T3F17.10 [Source:UniProtKB/TrEMBL;Acc:O82344]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.