Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88802 | Canola | nucleus | 92.0 | 93.38 |
| AT5G22310.1 | Thale cress | nucleus | 78.95 | 77.96 |
| CDX92367 | Canola | mitochondrion, plastid | 78.74 | 77.92 |
| CDY67997 | Canola | mitochondrion, plastid | 74.74 | 75.37 |
| CDY01038 | Canola | plastid | 36.63 | 28.52 |
| CDY08511 | Canola | plastid | 36.63 | 28.29 |
| VIT_06s0080g00930.t01 | Wine grape | plastid | 38.11 | 27.76 |
| Solyc11g068720.1.1 | Tomato | nucleus | 33.89 | 25.39 |
| KRH25284 | Soybean | plastid | 34.53 | 24.89 |
| KRH30384 | Soybean | plastid | 33.89 | 24.32 |
| Os02t0506100-00 | Rice | plastid | 21.89 | 23.85 |
| PGSC0003DMT400067737 | Potato | nucleus | 28.63 | 23.82 |
| TraesCS2B01G299400.1 | Wheat | nucleus, plastid | 27.58 | 23.52 |
| TraesCS2A01G282200.1 | Wheat | nucleus | 27.79 | 23.32 |
| TraesCS2D01G281000.1 | Wheat | nucleus, plastid | 27.58 | 23.14 |
| Solyc06g074190.2.1 | Tomato | nucleus | 26.11 | 22.88 |
| CDX73866 | Canola | cytosol | 17.68 | 22.76 |
| GSMUA_Achr6P16290_001 | Banana | nucleus | 29.47 | 22.69 |
| TraesCS7B01G035800.1 | Wheat | nucleus | 27.58 | 22.66 |
| TraesCS7D01G134000.1 | Wheat | nucleus | 27.58 | 22.63 |
| EES11990 | Sorghum | nucleus | 26.74 | 22.36 |
| TraesCS7A01G134600.1 | Wheat | nucleus | 27.16 | 22.28 |
| HORVU2Hr1G069400.8 | Barley | nucleus | 23.79 | 22.2 |
| Zm00001d003996_P001 | Maize | nucleus | 26.53 | 22.14 |
| PGSC0003DMT400015076 | Potato | nucleus | 26.53 | 22.14 |
| CDX80001 | Canola | nucleus | 15.16 | 21.69 |
| CDY56601 | Canola | cytosol, golgi, plastid | 16.84 | 21.68 |
| Zm00001d025208_P002 | Maize | nucleus | 26.11 | 21.16 |
| Os04t0382800-00 | Rice | nucleus | 25.26 | 21.02 |
| GSMUA_Achr6P08260_001 | Banana | nucleus | 24.0 | 19.9 |
| KXG30263 | Sorghum | mitochondrion | 24.63 | 18.81 |
| Zm00001d000402_P001 | Maize | mitochondrion | 21.47 | 18.61 |
| CDY42023 | Canola | nucleus | 15.58 | 17.7 |
| CDY25566 | Canola | nucleus | 21.26 | 17.44 |
| CDY34403 | Canola | nucleus | 21.05 | 17.39 |
| CDY37111 | Canola | nucleus | 24.0 | 16.79 |
| CDY22812 | Canola | nucleus | 23.16 | 16.67 |
| CDY39728 | Canola | nucleus | 20.84 | 16.61 |
| CDY29821 | Canola | mitochondrion | 22.11 | 16.43 |
| CDY44461 | Canola | nucleus | 20.63 | 16.25 |
| CDY25414 | Canola | mitochondrion | 21.68 | 16.17 |
| CDX80002 | Canola | cytosol | 0.21 | 2.17 |
Protein Annotations
| EnsemblPlants:CDX70996 | EnsemblPlantsGene:GSBRNA2T00140927001 | ncoils:Coil | PANTHER:PTHR31071 | PANTHER:PTHR31071:SF16 | ProteinID:CDX70996 |
| ProteinID:CDX70996.1 | SEG:seg | UniParc:UPI0004EC870B | MapMan:35.2 | : | : |
Description
BnaC03g10800D
Coordinates
chrLK031791:-:3100127..3101729
Molecular Weight (calculated)
54164.2 Da
IEP (calculated)
9.826
GRAVY (calculated)
-0.981
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRKKGCKIR KRGGSSSSSS SLARQNRFKR AIFAGKRAAQ DNGGSGTPVK SISAAKTPVL LSLSPEKHSV DQFQKLPVSA RKLAASLWEI SDGGTDPALN
101: SDRDNLRSKK PSGNRRKKSA EISSHHIQLN SSDPISRFGS ERIILGEDIV RGRSTNPQKV QLIEYKTTGT NSVKTRFKNI NDGLKTSKEL VKVLKRIGKL
201: GDDHKTASNR LISALVCELE RARSSLKHLM SEYDKEEEEN RRLIEKLREE AVIERKLRQR TEKMNRKLGR ELAEAKETER KTKEEMEREK RARDVLEEVC
301: DELARGIGED KKDMEKEREM MRIADVLREE RVQMKLMEAK FEFEEKHAAV ERLKKELRRV LEGKGPSEIG QVLEIIDGSD DDDEESDLKS IELNMESGSK
401: WGYVESRRDH RTESRFVGSG EDDDPVEKRS VVVDNGERDE SLKTLKEYIV SNMRFIGSSS SEQWNHRHLP SVEFV
101: SDRDNLRSKK PSGNRRKKSA EISSHHIQLN SSDPISRFGS ERIILGEDIV RGRSTNPQKV QLIEYKTTGT NSVKTRFKNI NDGLKTSKEL VKVLKRIGKL
201: GDDHKTASNR LISALVCELE RARSSLKHLM SEYDKEEEEN RRLIEKLREE AVIERKLRQR TEKMNRKLGR ELAEAKETER KTKEEMEREK RARDVLEEVC
301: DELARGIGED KKDMEKEREM MRIADVLREE RVQMKLMEAK FEFEEKHAAV ERLKKELRRV LEGKGPSEIG QVLEIIDGSD DDDEESDLKS IELNMESGSK
401: WGYVESRRDH RTESRFVGSG EDDDPVEKRS VVVDNGERDE SLKTLKEYIV SNMRFIGSSS SEQWNHRHLP SVEFV
001: MEQRKKGCKI RKRGGSSSSS SSLARRNRFK RAIFAGKRAA QDDGGSGTPV KSITAAKTPV LLSFSPENLP IDHHQLQKSC VSARKLAATL WEINDDADPP
101: VNSDKDCLRS KKPSRYRAKK STEFSSIDFP PRSSDPISRL SSERIDLCDD MIRRRSTNPQ KLNPIEYKII GANSVKTRFK NVSDGLTTSK ELVKVLKRIG
201: ELGDDHKTAS NRLISALLCE LDRARSSLKH LMSELDEEEE EKRRLIESLQ EEAMVERKLR RRTEKMNRRL GRELTEAKET ERKMKEEMKR EKRAKDVLEE
301: VCDELTKGIG DDKKEMEKER EMMHIADVLR EERVQMKLTE AKFEFEDKYA AVERLKKELR RVLDGEEGKG SSEIRRILEV IDGSGSDDDE ESDLKSIELN
401: MESGSKWGYV DSLKDRRRFD GSGGDDDDDD PVEKRSVIVE NGERDESLKT LRDYIVSNVR CIGPSSSEQW NHRNLPSSEF V
101: VNSDKDCLRS KKPSRYRAKK STEFSSIDFP PRSSDPISRL SSERIDLCDD MIRRRSTNPQ KLNPIEYKII GANSVKTRFK NVSDGLTTSK ELVKVLKRIG
201: ELGDDHKTAS NRLISALLCE LDRARSSLKH LMSELDEEEE EKRRLIESLQ EEAMVERKLR RRTEKMNRRL GRELTEAKET ERKMKEEMKR EKRAKDVLEE
301: VCDELTKGIG DDKKEMEKER EMMHIADVLR EERVQMKLTE AKFEFEDKYA AVERLKKELR RVLDGEEGKG SSEIRRILEV IDGSGSDDDE ESDLKSIELN
401: MESGSKWGYV DSLKDRRRFD GSGGDDDDDD PVEKRSVIVE NGERDESLKT LRDYIVSNVR CIGPSSSEQW NHRNLPSSEF V
Arabidopsis Description
AT5g22310/MWD9_9 [Source:UniProtKB/TrEMBL;Acc:Q93ZM2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.