Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011462.1-P | Field mustard | nucleus | 95.28 | 95.28 |
| CDX68998 | Canola | nucleus | 79.92 | 81.85 |
| AT4G33690.1 | Thale cress | nucleus | 66.14 | 68.29 |
| CDX74067 | Canola | nucleus | 44.09 | 50.22 |
| CDY43847 | Canola | nucleus | 35.04 | 46.35 |
| CDY48230 | Canola | cytosol, extracellular, plastid | 18.9 | 43.24 |
| TraesCS7B01G305800.3 | Wheat | nucleus | 39.37 | 40.16 |
| TraesCS7D01G106500.1 | Wheat | nucleus | 40.16 | 40.0 |
| Zm00001d019181_P001 | Maize | nucleus | 40.16 | 39.69 |
| TraesCS7A01G111400.1 | Wheat | nucleus | 39.76 | 39.61 |
| PGSC0003DMT400013080 | Potato | nucleus | 39.76 | 39.15 |
| Os07t0213400-01 | Rice | nucleus, plastid | 40.94 | 39.1 |
| TraesCS7B01G009300.1 | Wheat | nucleus | 39.76 | 39.0 |
| CDY08019 | Canola | mitochondrion, nucleus | 44.49 | 38.97 |
| EER97413 | Sorghum | nucleus | 38.98 | 38.82 |
| TraesCS7A01G405900.1 | Wheat | nucleus | 38.19 | 38.65 |
| EER96069 | Sorghum | nucleus | 38.58 | 38.43 |
| Zm00001d021873_P001 | Maize | nucleus | 38.98 | 38.37 |
| KRH21674 | Soybean | nucleus | 42.91 | 36.95 |
| HORVU7Hr1G094990.2 | Barley | nucleus | 39.76 | 36.2 |
| HORVU7Hr1G023800.2 | Barley | cytosol | 21.65 | 35.48 |
| KRH10674 | Soybean | nucleus | 41.73 | 35.33 |
| Os08t0192200-01 | Rice | nucleus | 12.6 | 33.68 |
| CDY26345 | Canola | cytosol, nucleus, plastid | 39.76 | 33.67 |
| Solyc01g106560.2.1 | Tomato | nucleus | 39.37 | 32.57 |
| TraesCS5A01G215300.3 | Wheat | nucleus | 39.37 | 30.12 |
| TraesCS5D01G216700.1 | Wheat | nucleus | 39.37 | 29.94 |
| HORVU7Hr1G023920.2 | Barley | cytosol, nucleus | 23.23 | 29.5 |
| CDY71888 | Canola | extracellular, golgi | 35.43 | 29.32 |
| HORVU7Hr1G023780.5 | Barley | cytosol | 13.78 | 29.17 |
| CDY48061 | Canola | plastid | 36.61 | 27.27 |
| VIT_03s0088g01000.t01 | Wine grape | nucleus | 42.52 | 25.71 |
| CDX74406 | Canola | endoplasmic reticulum | 20.47 | 22.22 |
| CDY22755 | Canola | extracellular | 10.63 | 22.13 |
| CDY16047 | Canola | golgi, plasma membrane | 25.2 | 21.26 |
| GSMUA_Achr6P16520_001 | Banana | nucleus | 17.32 | 17.67 |
| HORVU7Hr1G023790.1 | Barley | cytosol, mitochondrion, nucleus | 5.51 | 17.07 |
| CDY48229 | Canola | cytosol, mitochondrion | 9.45 | 15.79 |
Protein Annotations
| EnsemblPlants:CDX75374 | EnsemblPlantsGene:GSBRNA2T00121256001 | ncoils:Coil | PANTHER:PTHR34684 | ProteinID:AID60092.1 | ProteinID:CDX75374 |
| ProteinID:CDX75374.1 | SEG:seg | UniParc:UPI0004A88C6B | UniProt:A0A068F6W6 | MapMan:35.2 | : |
Description
BnaA01g03280DAt4g33690-like protein [Source:UniProtKB/TrEMBL;Acc:A0A068F6W6]
Coordinates
chrLK031804:+:842778..843941
Molecular Weight (calculated)
29185.2 Da
IEP (calculated)
10.913
GRAVY (calculated)
-1.459
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLETENRIA SILLREAAEL RRQAEKEGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKA VETDEMWRLR RAEVEFDERL KRKSREESSG SGQSGQGDRR
101: SFGKRCTSVD ENVAGSSSSS SSQSRNKRWQ RDGDGGKGLG DVEVETFLQS RVKRGRGSVG PMMDEPFPCL HVPKPSRTSD TGGECKLVSQ PEKRPILRHH
201: TDSSSSSDDE VHERTHRKRK ERKQKLSKRH KSKDKKRDGK EKRREKKKRK HDRD
101: SFGKRCTSVD ENVAGSSSSS SSQSRNKRWQ RDGDGGKGLG DVEVETFLQS RVKRGRGSVG PMMDEPFPCL HVPKPSRTSD TGGECKLVSQ PEKRPILRHH
201: TDSSSSSDDE VHERTHRKRK ERKQKLSKRH KSKDKKRDGK EKRREKKKRK HDRD
001: MDLETENRIA SILLREAAEL RRQAEKDGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKA VETNEMWSLR SKEIEFGERL KRKSRDESSN GQSEQNNRRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD
Arabidopsis Description
At4g33690 [Source:UniProtKB/TrEMBL;Acc:Q6NPE9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.