CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001231.1-P	Field mustard	nucleus	82.51	85.98
CDY08019	Canola	mitochondrion, nucleus	92.38	71.03
CDY43847	Canola	nucleus	55.16	64.06
CDX68998	Canola	nucleus	51.57	46.37
CDY26345	Canola	cytosol, nucleus, plastid	60.09	44.67
CDX75374	Canola	nucleus	50.22	44.09
CDY48230	Canola	cytosol, extracellular, plastid	21.52	43.24
TraesCS7A01G111400.1	Wheat	nucleus	48.88	42.75
TraesCS7B01G305800.3	Wheat	nucleus	46.64	41.77
TraesCS7A01G405900.1	Wheat	nucleus	46.64	41.43
Os07t0213400-01	Rice	nucleus, plastid	49.33	41.35
TraesCS7D01G106500.1	Wheat	nucleus	47.09	41.18
EER97413	Sorghum	nucleus	47.09	41.18
TraesCS7B01G009300.1	Wheat	nucleus	47.53	40.93
Zm00001d019181_P001	Maize	nucleus	47.09	40.86
CDY71888	Canola	extracellular, golgi	55.61	40.39
Zm00001d021873_P001	Maize	nucleus	46.64	40.31
PGSC0003DMT400013080	Potato	nucleus	46.64	40.31
EER96069	Sorghum	nucleus	45.29	39.61
HORVU7Hr1G094990.2	Barley	nucleus	45.74	36.56
HORVU7Hr1G023800.2	Barley	cytosol	25.11	36.13
KRH10674	Soybean	nucleus	48.43	36.0
Os08t0192200-01	Rice	nucleus	15.25	35.79
KRH21674	Soybean	nucleus	47.09	35.59
CDX74406	Canola	endoplasmic reticulum	36.77	35.04
CDY48061	Canola	plastid	52.91	34.6
Solyc01g106560.2.1	Tomato	nucleus	46.19	33.55
TraesCS5A01G215300.3	Wheat	nucleus	47.98	32.23
HORVU7Hr1G023920.2	Barley	cytosol, nucleus	28.7	32.0
TraesCS5D01G216700.1	Wheat	nucleus	47.53	31.74
CDY16047	Canola	golgi, plasma membrane	39.01	28.9
HORVU7Hr1G023780.5	Barley	cytosol	14.8	27.5
VIT_03s0088g01000.t01	Wine grape	nucleus	51.57	27.38
CDY22755	Canola	extracellular	14.35	26.23
CDY48229	Canola	cytosol, mitochondrion	16.59	24.34
GSMUA_Achr6P16520_001	Banana	nucleus	21.97	19.68
HORVU7Hr1G023790.1	Barley	cytosol, mitochondrion, nucleus	6.73	18.29

Protein Annotations

EnsemblPlants:CDX74067	EnsemblPlantsGene:GSBRNA2T00111815001	ncoils:Coil	PANTHER:PTHR34684	ProteinID:CDX74067	ProteinID:CDX74067.1
SEG:seg	UniParc:UPI0004EDE3AB	MapMan:35.2	:	:	:

Description

BnaA03g29800D

Coordinates

chrLK031800:-:1161376..1162634

Molecular Weight (calculated)

25905.3 Da

IEP (calculated)

10.613

GRAVY (calculated)

-1.505

Length

223 amino acids

Sequence
(BLAST)

001: MDLETENRIA SVLLREAAEL RRRAERDGVR AYLEKPNVRH RPNSRFLTAT VLGVQQSNRA VETNEMWKAR EKEIELENER RKRKSREESS SSSSSRMKRS
101: GSFSKRSLDK RCSSSNDEKR FTHPLDDEDE GLGDDEIESF LQARNKRGRG SIGPRMDETG PYLPAEKVDE LQSSGTRERK VVLGPERPPS LRQHSDDKET
201: GRRIKKDSKK DEKTKKKRKR DKH

Best Arabidopsis Sequence Match ( AT4G33690.1 )
(BLAST)

001: MDLETENRIA SILLREAAEL RRQAEKDGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKA VETNEMWSLR SKEIEFGERL KRKSRDESSN GQSEQNNRRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD

Arabidopsis Description

At4g33690 [Source:UniProtKB/TrEMBL;Acc:Q6NPE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.