CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48229	Canola	cytosol, mitochondrion	45.9	36.84
CDX74406	Canola	endoplasmic reticulum	49.18	25.64
CDY43847	Canola	nucleus	33.61	21.35
CDY71888	Canola	extracellular, golgi	44.26	17.59
CDY48061	Canola	plastid	43.44	15.54
CDY16047	Canola	golgi, plasma membrane	36.07	14.62
CDX74067	Canola	nucleus	26.23	14.35
CDY26345	Canola	cytosol, nucleus, plastid	31.15	12.67
Zm00001d019181_P001	Maize	nucleus	24.59	11.67
TraesCS7A01G111400.1	Wheat	nucleus	22.95	10.98
Zm00001d021873_P001	Maize	nucleus	22.95	10.85
TraesCS7B01G305800.3	Wheat	nucleus	22.13	10.84
CDY08019	Canola	mitochondrion, nucleus	25.41	10.69
CDX75374	Canola	nucleus	22.13	10.63
EER96069	Sorghum	nucleus	22.13	10.59
EER97413	Sorghum	nucleus	22.13	10.59
TraesCS7D01G106500.1	Wheat	nucleus	22.13	10.59
Os07t0213400-01	Rice	nucleus, plastid	22.95	10.53
KRH21674	Soybean	nucleus	25.41	10.51
HORVU7Hr1G023920.2	Barley	cytosol, nucleus	17.21	10.5
PGSC0003DMT400013080	Potato	nucleus	22.13	10.47
TraesCS7A01G405900.1	Wheat	nucleus	21.31	10.36
KRH10674	Soybean	nucleus	25.41	10.33
CDX68998	Canola	nucleus	20.49	10.08
TraesCS7B01G009300.1	Wheat	nucleus	20.49	9.65
HORVU7Hr1G094990.2	Barley	nucleus	21.31	9.32
GSMUA_Achr6P16520_001	Banana	nucleus	18.03	8.84
Solyc01g106560.2.1	Tomato	nucleus	22.13	8.79
TraesCS5A01G215300.3	Wheat	nucleus	22.13	8.13
TraesCS5D01G216700.1	Wheat	nucleus	22.13	8.08
VIT_03s0088g01000.t01	Wine grape	nucleus	24.59	7.14
HORVU7Hr1G023800.2	Barley	cytosol	9.02	7.1
CDY48230	Canola	cytosol, extracellular, plastid	5.74	6.31
HORVU7Hr1G023790.1	Barley	cytosol, mitochondrion, nucleus	4.1	6.1
HORVU7Hr1G023780.5	Barley	cytosol	3.28	3.33
Os08t0192200-01	Rice	nucleus	2.46	3.16

Protein Annotations

EnsemblPlants:CDY22755	EnsemblPlantsGene:GSBRNA2T00021076001	GO:A0A078G8H9	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ProteinID:CDY22755	ProteinID:CDY22755.1	TMHMM:TMhelix	UniParc:UPI0004EEA304	UniProt:A0A078G8H9	MapMan:35.2

Description

BnaA08g05850DBnaA08g05850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8H9]

Coordinates

chrLK032135:+:345865..347008

Molecular Weight (calculated)

13905.9 Da

IEP (calculated)

4.873

GRAVY (calculated)

0.013

Length

122 amino acids

Sequence
(BLAST)

001: MMRIESFLQS RYICLFAIAS VTFSFLHLLS LFVNDRNKRG RGSVGPRMDE NVPYLPTEKV DQLQKVCGDI EFAVYKCLQE EWGVLEKSPE AALDVDQTIF
101: KLLQQEDLLA LRPSSCSACL LQ

Best Arabidopsis Sequence Match ( AT4G33690.1 )
(BLAST)

001: MDLETENRIA SILLREAAEL RRQAEKDGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKA VETNEMWSLR SKEIEFGERL KRKSRDESSN GQSEQNNRRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD

Arabidopsis Description

At4g33690 [Source:UniProtKB/TrEMBL;Acc:Q6NPE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.