CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 1
golgi 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48230	Canola	cytosol, extracellular, plastid	21.59	58.56
CDY43847	Canola	nucleus	29.24	45.83
CDY48061	Canola	plastid	51.83	45.75
CDY48229	Canola	cytosol, mitochondrion	22.92	45.39
CDX74406	Canola	endoplasmic reticulum	35.22	45.3
CDY71888	Canola	extracellular, golgi	45.51	44.63
CDX74067	Canola	nucleus	28.9	39.01
CDY22755	Canola	extracellular	14.62	36.07
CDY08019	Canola	mitochondrion, nucleus	31.89	33.1
Zm00001d019181_P001	Maize	nucleus	25.58	29.96
CDY26345	Canola	cytosol, nucleus, plastid	29.57	29.67
EER96069	Sorghum	nucleus	24.58	29.02
EER97413	Sorghum	nucleus	24.58	29.02
TraesCS7A01G111400.1	Wheat	nucleus	24.25	28.63
TraesCS7D01G106500.1	Wheat	nucleus	23.92	28.24
TraesCS7B01G009300.1	Wheat	nucleus	24.25	28.19
Os07t0213400-01	Rice	nucleus, plastid	24.58	27.82
TraesCS7A01G405900.1	Wheat	nucleus	22.92	27.49
TraesCS7B01G305800.3	Wheat	nucleus	22.59	27.31
Zm00001d021873_P001	Maize	nucleus	23.26	27.13
CDX68998	Canola	nucleus	21.93	26.61
PGSC0003DMT400013080	Potato	nucleus	22.59	26.36
Os08t0192200-01	Rice	nucleus	7.97	25.26
CDX75374	Canola	nucleus	21.26	25.2
HORVU7Hr1G094990.2	Barley	nucleus	23.26	25.09
Solyc01g106560.2.1	Tomato	nucleus	23.92	23.45
KRH10674	Soybean	nucleus	23.26	23.33
HORVU7Hr1G023800.2	Barley	cytosol	11.63	22.58
KRH21674	Soybean	nucleus	21.93	22.37
TraesCS5A01G215300.3	Wheat	nucleus	24.58	22.29
TraesCS5D01G216700.1	Wheat	nucleus	24.58	22.16
HORVU7Hr1G023920.2	Barley	cytosol, nucleus	13.29	20.0
HORVU7Hr1G023780.5	Barley	cytosol	7.97	20.0
VIT_03s0088g01000.t01	Wine grape	nucleus	23.59	16.9
GSMUA_Achr6P16520_001	Banana	nucleus	11.3	13.65
HORVU7Hr1G023790.1	Barley	cytosol, mitochondrion, nucleus	1.66	6.1

Protein Annotations

EnsemblPlants:CDY16047	EnsemblPlantsGene:GSBRNA2T00090443001	ncoils:Coil	PANTHER:PTHR34684	ProteinID:CDY16047	ProteinID:CDY16047.1
SEG:seg	UniParc:UPI0004EE062F	UniProt:A0A078FT94	MapMan:35.2	:	:

Description

BnaC08g40760DBnaC08g40760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT94]

Coordinates

chrLK032060:+:319806..323449

Molecular Weight (calculated)

34519.2 Da

IEP (calculated)

5.272

GRAVY (calculated)

-0.327

Length

301 amino acids

Sequence
(BLAST)

001: MYKNIKVDLY KDIFINTLFI NDQKTILPLT LSLWRSSFLT LSLTIFFLPL CLRFTGDPPS LSHSTGSLRF TLSNPTSVQD SQLFPRSCVQ AYMRATTLPA
101: HICFDVQCPL VLMDLETENR IALVLLREAA EHRPNSRFLT ATVLGVQQLC DILLFVEAIA AQEQENERLK RKSRGKQQQH SINEERNITH QSSSDKRLYL
201: DDDDEIESFL RSLNKRGRGS VGPRMDETVP YLPTEKVDQL QSSDTRERKV RDEAAEVRGD IEFAVYRCNK SECLQEEWGV LEKSPEAALD VDQTIFVAVL
301: W

Best Arabidopsis Sequence Match ( AT4G33690.1 )
(BLAST)

001: MDLETENRIA SILLREAAEL RRQAEKDGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKA VETNEMWSLR SKEIEFGERL KRKSRDESSN GQSEQNNRRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD

Arabidopsis Description

At4g33690 [Source:UniProtKB/TrEMBL;Acc:Q6NPE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.