CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
extracellular 4
golgi 4
plasma membrane 4
endoplasmic reticulum 5
vacuole 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48229	Canola	cytosol, mitochondrion	55.13	84.87
CDY71888	Canola	extracellular, golgi	70.51	53.75
CDY43847	Canola	nucleus	41.45	50.52
CDY22755	Canola	extracellular	25.64	49.18
CDY48061	Canola	plastid	55.56	38.12
CDX74067	Canola	nucleus	35.04	36.77
CDY16047	Canola	golgi, plasma membrane	45.3	35.22
CDY26345	Canola	cytosol, nucleus, plastid	38.89	30.33
CDY08019	Canola	mitochondrion, nucleus	36.75	29.66
Zm00001d019181_P001	Maize	nucleus	25.64	23.35
TraesCS7A01G111400.1	Wheat	nucleus	23.93	21.96
PGSC0003DMT400013080	Potato	nucleus	23.5	21.32
EER97413	Sorghum	nucleus	23.08	21.18
TraesCS7D01G106500.1	Wheat	nucleus	23.08	21.18
Os08t0192200-01	Rice	nucleus	8.55	21.05
TraesCS7B01G009300.1	Wheat	nucleus	23.08	20.85
EER96069	Sorghum	nucleus	22.65	20.78
CDX75374	Canola	nucleus	22.22	20.47
Os07t0213400-01	Rice	nucleus, plastid	23.08	20.3
Zm00001d021873_P001	Maize	nucleus	22.22	20.16
TraesCS7B01G305800.3	Wheat	nucleus	21.37	20.08
CDX68998	Canola	nucleus	20.94	19.76
TraesCS7A01G405900.1	Wheat	nucleus	20.94	19.52
KRH10674	Soybean	nucleus	24.36	19.0
HORVU7Hr1G023920.2	Barley	cytosol, nucleus	15.38	18.0
KRH21674	Soybean	nucleus	21.37	16.95
Solyc01g106560.2.1	Tomato	nucleus	22.22	16.94
HORVU7Hr1G094990.2	Barley	nucleus	20.09	16.85
GSMUA_Achr6P16520_001	Banana	nucleus	17.52	16.47
TraesCS5A01G215300.3	Wheat	nucleus	23.08	16.27
TraesCS5D01G216700.1	Wheat	nucleus	23.08	16.17
HORVU7Hr1G023800.2	Barley	cytosol	9.4	14.19
HORVU7Hr1G023780.5	Barley	cytosol	6.84	13.33
VIT_03s0088g01000.t01	Wine grape	nucleus	22.22	12.38
CDY48230	Canola	cytosol, extracellular, plastid	3.85	8.11
HORVU7Hr1G023790.1	Barley	cytosol, mitochondrion, nucleus	2.56	7.32

Protein Annotations

EnsemblPlants:CDX74406	EnsemblPlantsGene:GSBRNA2T00114253001	ncoils:Coil	ProteinID:CDX74406	ProteinID:CDX74406.1	SEG:seg
SignalP:SignalP-noTM	UniParc:UPI0004EE8DF2	MapMan:35.2	:	:	:

Description

BnaA04g09830D

Coordinates

chrLK031801:+:1039..2836

Molecular Weight (calculated)

26776.2 Da

IEP (calculated)

8.480

GRAVY (calculated)

-0.356

Length

234 amino acids

Sequence
(BLAST)

001: MVSELILRSL MFLTATVLGV QQLCDILLFV EAIAAQEQEN KRLKRKSREE SSSSSSQMKR SSSFSKRSLD KKCSSINEER KITHRSSLDK RLIESFLQSR
101: NKRGRGSVGP RMDENVPYLP TEKVDQLQSS DTRERKVRDE AAEIRGDIEF AVYECLQEEW GVLEKSPEAA LDVVQMIFVV VAEDVERSKT TVLWAVRNFS
201: SKKICLLYVH RPARPASCSE NLLLLFLSDL TVLW

Best Arabidopsis Sequence Match ( AT3G49060.1 )
(BLAST)

001: MGEIGGEELV LDVDETIFVA VAEDVERSKT TVLWAARNFS GKKICLLYVH RTARAASWTH KKLVGGSFKK HDVKVIERVE KPKVDELMNS YLQLLSETEI
101: QTDKLCIAGQ NIEECIVELI ARHKIKWLVM GAASDKHYSW KMTDLKSKKA IFVCKKAPDS CHIWFLCKGY LIFTRASNDD SNNRQTMPPL VQLDSDNETR
201: KSEKLESSYM RRRLRYWRSL LEQDGEKDTG QLEREKVEPR APPLFSSGSS SSFGEPVGPE PVSPELVDSD TLNTSNVEEK EREGDVARKV HRYDKAMHDI
301: GQSDRTVYGE AGKKWEEDAS TTEALCKAKA LEGLCIKESS QRKRLEELLE KEKLEVKMVI EQNNGFMKEL QMVQGRNLKL ESQMRKLQDL EKEHGEKFDT
401: AMELLKSFRQ KRDEIRIDHE NAVKEVNALR RLVKGETGES SGSEMLDYSF MEINEATNEF DPSWKLGEGK YGSVYKGNLQ HLQVAVKMLP SYGSLNHFEF
501: ERRVEILSRV RHPNLVTLMG ACPESRSLIY QYIPNGSLED CFSSENNVPA LSWESRIRIA SEICSALLFL HSNIPCIIHG NLKPSKILLD SNLVTKINDY
601: GISQLIPIDG LDKSDPHVDP HYFVSREMTL ESDIYAFGII LLQLLTRRPV SGILRDVKCA LENDNISAVL DNSAGDWPVA RGKKLANVAI RCCKKNPMNR
701: PDLAVVLRFI DRMKAPEVPS SETSSYANQN VPRRPPSHYL CPIFQEVMKD PLIAADGFTY EAEAIREWLA NGHDTSPMTN LKMEDCNLIP NHALHLAIQD
801: WQNQW

Arabidopsis Description

PUB32U-box domain-containing protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q94A51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.