Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75374 | Canola | nucleus | 68.29 | 66.14 |
| Bra011462.1-P | Field mustard | nucleus | 67.48 | 65.35 |
| CDX68998 | Canola | nucleus | 63.41 | 62.9 |
| PGSC0003DMT400013080 | Potato | nucleus | 42.28 | 40.31 |
| TraesCS7B01G305800.3 | Wheat | nucleus | 40.24 | 39.76 |
| TraesCS7A01G405900.1 | Wheat | nucleus | 40.24 | 39.44 |
| TraesCS7A01G111400.1 | Wheat | nucleus | 40.65 | 39.22 |
| TraesCS7D01G106500.1 | Wheat | nucleus | 40.24 | 38.82 |
| Os07t0213400-01 | Rice | nucleus, plastid | 41.46 | 38.35 |
| TraesCS7B01G009300.1 | Wheat | nucleus | 39.84 | 37.84 |
| KRH21674 | Soybean | nucleus | 44.31 | 36.95 |
| EER97413 | Sorghum | nucleus | 38.21 | 36.86 |
| HORVU7Hr1G023800.2 | Barley | cytosol | 23.17 | 36.77 |
| Zm00001d019181_P001 | Maize | nucleus | 38.21 | 36.58 |
| EER96069 | Sorghum | nucleus | 37.4 | 36.08 |
| Zm00001d021873_P001 | Maize | nucleus | 37.8 | 36.05 |
| HORVU7Hr1G094990.2 | Barley | nucleus | 40.65 | 35.84 |
| KRH10674 | Soybean | nucleus | 42.68 | 35.0 |
| Solyc01g106560.2.1 | Tomato | nucleus | 42.68 | 34.2 |
| Os08t0192200-01 | Rice | nucleus | 12.6 | 32.63 |
| TraesCS5A01G215300.3 | Wheat | nucleus | 40.24 | 29.82 |
| HORVU7Hr1G023920.2 | Barley | cytosol, nucleus | 23.98 | 29.5 |
| TraesCS5D01G216700.1 | Wheat | nucleus | 39.43 | 29.04 |
| VIT_03s0088g01000.t01 | Wine grape | nucleus | 44.72 | 26.19 |
| HORVU7Hr1G023780.5 | Barley | cytosol | 12.6 | 25.83 |
| GSMUA_Achr6P16520_001 | Banana | nucleus | 19.92 | 19.68 |
| HORVU7Hr1G023790.1 | Barley | cytosol, mitochondrion, nucleus | 6.5 | 19.51 |
Protein Annotations
| MapMan:35.2 | EntrezGene:829511 | UniProt:A0A178V2N9 | ProteinID:AEE86266.1 | ArrayExpress:AT4G33690 | EnsemblPlantsGene:AT4G33690 |
| RefSeq:AT4G33690 | TAIR:AT4G33690 | RefSeq:AT4G33690-TAIR-G | EnsemblPlants:AT4G33690.1 | TAIR:AT4G33690.1 | EMBL:BT010676 |
| EMBL:BT010975 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 |
| RefSeq:NP_195095.2 | ProteinID:OAP00479.1 | PO:PO:0000293 | PO:PO:0025195 | PANTHER:PTHR34684 | UniProt:Q6NPE9 |
| UniParc:UPI0000220049 | SEG:seg | : | : | : | : |
Description
At4g33690 [Source:UniProtKB/TrEMBL;Acc:Q6NPE9]
Coordinates
chr4:+:16174756..16176328
Molecular Weight (calculated)
28685.7 Da
IEP (calculated)
10.733
GRAVY (calculated)
-1.402
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLETENRIA SILLREAAEL RRQAEKDGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKA VETNEMWSLR SKEIEFGERL KRKSRDESSN GQSEQNNRRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.