Factsheet for Bra011462.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006148.1-P
Bra007711.1-P
Bra008906.1-P
Bra011462.1-P
Bra016574.1-P
Bra018081.1-P
Bra018407.1-P
Bra026236.1-P
Bra032050.1-P
Bra032668.1-P
Bra032712.1-P
Bra033217.1-P
Bra033769.1-P
Bra036246.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33690.1	Bra032668.1-P	AT1G02140.1	21798944
AT4G33690.1	Bra033217.1-P	AT1G02140.1	21798944
AT4G33690.1	Bra016574.1-P	AT1G17970.1	21798944
AT4G33690.1	Bra018407.1-P	AT2G29210.1	21798944
AT4G33690.1	Bra018081.1-P	AT3G48150.1	21798944
AT4G33690.1	Bra033769.1-P	AT3G48150.1	21798944
AT4G33690.1	Bra007711.1-P	AT4G02720.1	21798944
AT4G33690.1	Bra032050.1-P	AT4G02720.1	21798944
AT4G33690.1	Bra036246.1-P	AT4G02720.1	21798944
AT4G33690.1	Bra032712.1-P	AT4G13540.1	21798944
AT4G33690.1	Bra026236.1-P	AT4G17220.1	21798944
AT4G33690.1	Bra011462.1-P	AT4G33690.1	21798944
AT4G33690.1	Bra006148.1-P	AT5G12230.1	21798944
AT4G33690.1	Bra008906.1-P	AT5G12230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75374	Canola	nucleus	95.28	95.28
AT4G33690.1	Thale cress	nucleus	65.35	67.48
Bra001231.1-P	Field mustard	nucleus	41.73	49.53
TraesCS7B01G305800.3	Wheat	nucleus	39.76	40.56
TraesCS7D01G106500.1	Wheat	nucleus	40.55	40.39
TraesCS7A01G111400.1	Wheat	nucleus	40.16	40.0
Os07t0213400-01	Rice	nucleus, plastid	41.73	39.85
Zm00001d019181_P001	Maize	nucleus	39.76	39.3
TraesCS7A01G405900.1	Wheat	nucleus	38.58	39.04
TraesCS7B01G009300.1	Wheat	nucleus	39.76	39.0
EER97413	Sorghum	nucleus	38.98	38.82
PGSC0003DMT400013080	Potato	nucleus	39.37	38.76
EER96069	Sorghum	nucleus	38.58	38.43
Zm00001d021873_P001	Maize	nucleus	38.98	38.37
Bra023945.1-P	Field mustard	cytosol	42.13	38.35
HORVU7Hr1G094990.2	Barley	nucleus	40.16	36.56
KRH10674	Soybean	nucleus	42.52	36.0
KRH21674	Soybean	nucleus	41.34	35.59
HORVU7Hr1G023800.2	Barley	cytosol	21.65	35.48
Os08t0192200-01	Rice	nucleus	12.2	32.63
Solyc01g106560.2.1	Tomato	nucleus	39.37	32.57
TraesCS5A01G215300.3	Wheat	nucleus	39.76	30.42
HORVU7Hr1G023920.2	Barley	cytosol, nucleus	23.62	30.0
TraesCS5D01G216700.1	Wheat	nucleus	39.37	29.94
HORVU7Hr1G023780.5	Barley	cytosol	13.78	29.17
VIT_03s0088g01000.t01	Wine grape	nucleus	42.13	25.48
GSMUA_Achr6P16520_001	Banana	nucleus	18.11	18.47
HORVU7Hr1G023790.1	Barley	cytosol, mitochondrion, nucleus	5.91	18.29

Protein Annotations

EnsemblPlants:Bra011462.1	EnsemblPlants:Bra011462.1-P	EnsemblPlantsGene:Bra011462	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	ncoils:Coil	PANTHER:PTHR34684	SEG:seg
UniParc:UPI0002545AC8	UniProt:M4D4Q8	MapMan:35.2	:	:	:

Description

AT4G33690 (E=7e-070) | unknown protein

Coordinates

chrA01:-:2079638..2080603

Molecular Weight (calculated)

29320.3 Da

IEP (calculated)

10.647

GRAVY (calculated)

-1.500

Length

254 amino acids

Sequence
(BLAST)

001: MDLETENRIA SILLREAAEL RRQAEKEGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKA VETDEMWRLR RAEVEFDERL KRKSREESCG SGQSEEGDRR
101: SFGKRCTSVD ENVAGSSSSS SSQSRNRRCQ RDGDDGKGLG DVEVETFLQS RVKRGRGSVG PKMDEPFPCL PVPKPSRTSD TGGECKLVSQ PEKRPILRHH
201: TDSSSSSDDE AHERTHRKRK ERKQKLSKRH KSKEEKRDRK EKRREKKKRK HDRD

Best Arabidopsis Sequence Match ( AT4G33690.1 )
(BLAST)

001: MDLETENRIA SILLREAAEL RRQAEKDGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKA VETNEMWSLR SKEIEFGERL KRKSRDESSN GQSEQNNRRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD

Arabidopsis Description

At4g33690 [Source:UniProtKB/TrEMBL;Acc:Q6NPE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.