Factsheet for Bra032668.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002390.1-P
Bra002391.1-P
Bra002826.1-P
Bra006611.1-P
Bra006612.1-P
Bra013872.1-P
Bra028938.1-P
Bra035613.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02140.1	Bra013872.1-P	AT4G25200.1	21798944
AT1G02140.1	Bra002390.1-P	AT5G22120.1	21798944
AT1G02140.1	Bra002391.1-P	AT5G22120.1	21798944
AT1G02140.1	Bra006611.1-P	AT5G22120.1	21798944
AT1G02140.1	Bra006612.1-P	AT5G22120.1	21798944
AT1G02140.1	Bra002826.1-P	AT5G56290.1	21798944
AT1G02140.1	Bra028938.1-P	AT5G56290.1	21798944
AT1G02140.1	Bra035613.1-P	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38056	Canola	nucleus	50.38	89.33
Bra033217.1-P	Field mustard	nucleus	33.83	88.24
CDY15128	Canola	nucleus	50.75	86.54
AT1G02140.1	Thale cress	nucleus	46.62	82.67
KRH48832	Soybean	nucleus	45.86	80.79
VIT_16s0013g00610.t01	Wine grape	nucleus	45.49	80.13
Solyc03g093680.2.1	Tomato	nucleus	44.74	78.81
KRH11252	Soybean	nucleus	44.74	78.81
EES13219	Sorghum	nucleus	44.36	74.21
Zm00001d049723_P001	Maize	extracellular	44.74	73.91
Os12t0287200-01	Rice	nucleus	44.36	73.75
GSMUA_Achr11P...	Banana	nucleus	28.2	72.12
TraesCS7A01G323400.1	Wheat	nucleus	43.98	71.78
TraesCS7B01G224300.1	Wheat	nucleus	43.98	71.78
TraesCS7D01G320000.1	Wheat	nucleus	43.98	71.78
HORVU7Hr1G077420.4	Barley	nucleus	43.98	71.34
GSMUA_Achr11P...	Banana	nucleus	27.82	71.15
Os08t0107900-01	Rice	nucleus	42.11	68.71
EER99060	Sorghum	nucleus	40.23	67.3
Zm00001d035019_P001	Maize	nucleus	42.86	65.14
KRH66476	Soybean	nucleus	44.36	60.51
PGSC0003DMT400054151	Potato	nucleus	45.11	53.1
GSMUA_Achr11P...	Banana	mitochondrion	24.81	52.8

Protein Annotations

MapMan:17.3.1.1.2	Gene3D:3.30.1560.10	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra032668	EnsemblPlants:Bra032668.1	EnsemblPlants:Bra032668.1-P
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	InterPro:IPR036605
UniProt:M4EV35	InterPro:Mago_nashi	InterPro:Mago_nashi_sf	InterPro:P-loop_NTPase	PFAM:PF00071	PFAM:PF02792
PANTHER:PTHR12638	SMART:SM00175	SUPFAM:SSF52540	SUPFAM:SSF89817	InterPro:Small_GTPase	UniParc:UPI00025431CE

Description

AT1G02140 (E=4e-066) MEE63, MAGO, HAP1 | MAGO (MAGO NASHI); protein binding

Coordinates

chrA09:-:37100918..37103638

Molecular Weight (calculated)

29895.6 Da

IEP (calculated)

4.845

GRAVY (calculated)

-0.291

Length

266 amino acids

Sequence
(BLAST)

001: MEEENEFYLR YYVGHKGKFG HEFLEFEFRP DGKLRYANNS NYKNDTMIRK EVFLTPAVLK ECKRIVSESE IMKEDDFKWP EPDRVGRQEL EIVMGNEHIS
101: FATSKIGSLV DVQSSDDPEG LRIFYYLVQD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ ISQWCDLILF SGTLLVKSAS GLLLAVITVA HMGGGFPCRM
201: AFADEIGIPF METSAKDATN VEQAFMAMSA SIKESMASQP AGNNARTPTV QIRGQPVAQK NGCCST

Best Arabidopsis Sequence Match ( AT1G02140.1 )
(BLAST)

001: MAAEEATEFY LRYYVGHKGK FGHEFLEFEF REDGKLRYAN NSNYKNDTII RKEVFLTPAV LKECKRIVSE SEILKEDDNN WPEPDRVGKQ ELEIVLGNEH
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI

Arabidopsis Description

MEE63MEE63 [Source:UniProtKB/TrEMBL;Acc:A0A178WA48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.