CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88868
KRG89675
KRH23958
KRH25322
KRH39841
KRH56371
KRH62568

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02140.1	KRH23958	AT4G25200.1	21798944
AT1G02140.1	KRH39841	AT4G25200.1	21798944
AT1G02140.1	KRG88868	AT5G22120.1	21798944
AT1G02140.1	KRG89675	AT5G22120.1	21798944
AT1G02140.1	KRH25322	AT5G22120.1	21798944
AT1G02140.1	KRH56371	AT5G56290.1	21798944
AT1G02140.1	KRH62568	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48832	Soybean	nucleus	97.35	97.35
VIT_16s0013g00610.t01	Wine grape	nucleus	90.07	90.07
CDX90077	Canola	nucleus	85.43	87.16
CDY38056	Canola	nucleus	85.43	86.0
GSMUA_Achr11P...	Banana	nucleus	58.94	85.58
AT1G02140.1	Thale cress	nucleus	84.11	84.67
GSMUA_Achr11P...	Banana	nucleus	58.28	84.62
Bra033217.1-P	Field mustard	nucleus	56.95	84.31
Solyc03g093680.2.1	Tomato	nucleus	83.44	83.44
CDY15128	Canola	nucleus	85.43	82.69
Os12t0287200-01	Rice	nucleus	87.42	82.5
EES13219	Sorghum	nucleus	86.09	81.76
Zm00001d049723_P001	Maize	extracellular	86.75	81.37
TraesCS7A01G323400.1	Wheat	nucleus	86.09	79.75
TraesCS7B01G224300.1	Wheat	nucleus	86.09	79.75
TraesCS7D01G320000.1	Wheat	nucleus	86.09	79.75
HORVU7Hr1G077420.4	Barley	nucleus	86.09	79.27
EER99060	Sorghum	nucleus	80.13	76.1
Os08t0107900-01	Rice	nucleus	76.82	71.17
KRH66476	Soybean	nucleus	86.75	67.18
Zm00001d035019_P001	Maize	nucleus	77.48	66.86
GSMUA_Achr11P...	Banana	mitochondrion	51.66	62.4
PGSC0003DMT400054151	Potato	nucleus	77.48	51.77
Bra032668.1-P	Field mustard	cytosol	78.81	44.74

Protein Annotations

EntrezGene:100813864	MapMan:17.3.1.1.2	Gene3D:3.30.1560.10	EMBL:ACUP02009195	EnsemblPlantsGene:GLYMA_15G097500	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009987	GO:GO:0035145	UniProt:I1MF63	InterPro:IPR036605	EnsemblPlants:KRH11252
ProteinID:KRH11252	ProteinID:KRH11252.1	InterPro:Mago_nashi	InterPro:Mago_nashi_sf	PFAM:PF02792	PANTHER:PTHR12638
SUPFAM:SSF89817	UniParc:UPI000233B172	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:7571828..7575348

Molecular Weight (calculated)

17721.1 Da

IEP (calculated)

5.695

GRAVY (calculated)

-0.519

Length

151 amino acids

Sequence
(BLAST)

001: MGSEEEKGEF YLRYYVGHKG KFGHEFLEFE FRPDGKLRYA NNSNYKNDTI IRKEVYLNPA VLRECRRIIA ESEIMKEDDN NWPEPDRVGR QELEIVMGNE
101: HISFTTSKIG SLVDVQSSAD PDGLRIFYYL VQDLKCFVFS LISLHFKIKP I

Best Arabidopsis Sequence Match ( AT1G02140.1 )
(BLAST)

001: MAAEEATEFY LRYYVGHKGK FGHEFLEFEF REDGKLRYAN NSNYKNDTII RKEVFLTPAV LKECKRIVSE SEILKEDDNN WPEPDRVGKQ ELEIVLGNEH
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI

Arabidopsis Description

MEE63MEE63 [Source:UniProtKB/TrEMBL;Acc:A0A178WA48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.