Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
nucleus: 26579155 |
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
msms PMID:
26579155
doi
Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G320000.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS7A01G323400.1 | Wheat | nucleus | 100.0 | 100.0 |
| HORVU7Hr1G077420.4 | Barley | nucleus | 95.09 | 94.51 |
| Os12t0287200-01 | Rice | nucleus | 90.8 | 92.5 |
| EES13219 | Sorghum | nucleus | 88.34 | 90.57 |
| GSMUA_Achr11P... | Banana | nucleus | 57.06 | 89.42 |
| Zm00001d049723_P001 | Maize | extracellular | 87.73 | 88.82 |
| GSMUA_Achr11P... | Banana | nucleus | 56.44 | 88.46 |
| VIT_16s0013g00610.t01 | Wine grape | nucleus | 81.6 | 88.08 |
| KRH48832 | Soybean | nucleus | 80.37 | 86.75 |
| KRH11252 | Soybean | nucleus | 79.75 | 86.09 |
| CDX90077 | Canola | nucleus | 77.3 | 85.14 |
| CDY38056 | Canola | nucleus | 77.91 | 84.67 |
| Solyc03g093680.2.1 | Tomato | nucleus | 77.3 | 83.44 |
| Bra033217.1-P | Field mustard | nucleus | 52.15 | 83.33 |
| EER99060 | Sorghum | nucleus | 80.98 | 83.02 |
| CDY15128 | Canola | nucleus | 77.3 | 80.77 |
| AT1G02140.1 | Thale cress | nucleus | 74.23 | 80.67 |
| GSMUA_Achr11P... | Banana | mitochondrion | 46.63 | 60.8 |
| KRH66476 | Soybean | nucleus | 71.78 | 60.0 |
| PGSC0003DMT400054151 | Potato | nucleus | 73.01 | 52.65 |
| Bra032668.1-P | Field mustard | cytosol | 71.78 | 43.98 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G224300.1 | EnsemblPlantsGene:TraesCS7B01G224300 | Gene3D:3.30.1560.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:IPR036605 | InterPro:Mago_nashi | InterPro:Mago_nashi_sf | PANTHER:PTHR12638 | PANTHER:PTHR12638:SF1 |
| PFAM:PF02792 | SEG:seg | SUPFAM:SSF89817 | TIGR:cd11295 | MapMan:17.3.1.1.2 | : |
Description
No Description!
Coordinates
chr7B:-:424061370..424064495
Molecular Weight (calculated)
18616.2 Da
IEP (calculated)
6.126
GRAVY (calculated)
-0.429
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVGGAGNG AGEEAGGAEF YLRYYVGHKG KFGHEFLEFE FRPDGKLRYA NNSNYKNDTM IRKEVFVSPS VLREARRIIQ DSEIMKEDDS NWPEPDRVGR
101: QELEIVMGNE HISFTTSKIG SLVDVQTSKD PEGLRIFYYL VQDLKCFVFS LINLHFKIKP IQL
101: QELEIVMGNE HISFTTSKIG SLVDVQTSKD PEGLRIFYYL VQDLKCFVFS LINLHFKIKP IQL
001: MAAEEATEFY LRYYVGHKGK FGHEFLEFEF REDGKLRYAN NSNYKNDTII RKEVFLTPAV LKECKRIVSE SEILKEDDNN WPEPDRVGKQ ELEIVLGNEH
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI
Arabidopsis Description
MEE63MEE63 [Source:UniProtKB/TrEMBL;Acc:A0A178WA48]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.