Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29210.1 | CDY45430 | AT2G29210.1 | 21798944 |
| AT2G29210.1 | CDY65665 | AT2G29210.1 | 21798944 |
| AT2G29210.1 | CDX68998 | AT4G33690.1 | 21798944 |
| AT2G29210.1 | CDX75374 | AT4G33690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018407.1-P | Field mustard | nucleus | 95.23 | 94.67 |
| CDY65665 | Canola | nucleus | 84.03 | 86.29 |
| GSMUA_Achr9P03820_001 | Banana | cytosol | 7.63 | 78.05 |
| AT2G29210.1 | Thale cress | nucleus | 60.07 | 57.4 |
| KRH24737 | Soybean | nucleus | 38.38 | 36.18 |
| KRH29744 | Soybean | nucleus | 39.45 | 36.14 |
| VIT_06s0004g05220.t01 | Wine grape | nucleus | 39.69 | 36.12 |
| Os03t0270200-01 | Rice | nucleus | 35.88 | 35.83 |
| PGSC0003DMT400071935 | Potato | nucleus | 37.19 | 35.37 |
| KXG39705 | Sorghum | nucleus | 35.88 | 34.2 |
| TraesCS4A01G094800.1 | Wheat | nucleus | 33.37 | 33.98 |
| TraesCS4B01G209700.1 | Wheat | nucleus | 33.37 | 33.9 |
| Solyc09g030390.2.1 | Tomato | nucleus | 37.19 | 33.88 |
| TraesCS4D01G210400.1 | Wheat | nucleus | 33.25 | 33.78 |
| HORVU4Hr1G060270.6 | Barley | nucleus | 33.02 | 33.58 |
| Zm00001d028579_P027 | Maize | nucleus | 35.16 | 32.56 |
| GSMUA_Achr10P... | Banana | nucleus | 30.99 | 30.81 |
| Zm00001d047831_P001 | Maize | nucleus | 8.82 | 20.73 |
Protein Annotations
| EnsemblPlants:CDY45430 | EnsemblPlantsGene:GSBRNA2T00082041001 | Gene3D:1.20.1390.10 | GO:A0A078I3K2 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR002483 | InterPro:PWI_dom | InterPro:PWI_dom_sf |
| ncoils:Coil | PFAM:PF01480 | PFscan:PS51025 | ProteinID:CDY45430 | ProteinID:CDY45430.1 | SEG:seg |
| SMART:SM00311 | SUPFAM:SSF101233 | UniParc:UPI0004EE88C0 | UniProt:A0A078I3K2 | MapMan:17.3.1.2.2 | : |
Description
BnaA05g12710DBnaA05g12710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3K2]
Coordinates
chrLK032625:+:9115..13450
Molecular Weight (calculated)
95768.2 Da
IEP (calculated)
12.281
GRAVY (calculated)
-1.561
Length
839 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGFFRGTT ADQDTRFSNK QAKLMKSQKF ASELETLVDV SKVKMDVMKP WIATRVTELL GFEDEVLINF IYGLLDNKVV NGKEIQIAIT GFMEKNTVKF
101: MKELWTLLLS AQSNSSGVPQ QFLDASVAET IKFKEQARKK AEADENNKLV NEIGRRKCYE DDIQGKIDSG VEHKVTNAME AKPSRDRPED ERKVDEKVGG
201: ANERRRGSRS RSISRTNSGS RSSSGGRKSR SLSRSSDASI SPRKRRPSYS RRRSRSRSLS RSLSPRRRRV RSPYGSRSRS PIRRHRSPSP QRRRRVSTPE
301: RRRQSSPPSR RRRSPSPPVR RRRSPSPPAK RRRSPSPSAR RRRSPSPLAR KRRSPSPPVR RRRSPSPPAR RQRSPLPFRR RRSPSPVARR RRSPSPLYRR
401: NRSRSRSPLA KRERSDSPGR SPSLVGSRRA PAGQRLPSPP ARPRLPSPPA GQRLPSPPPR RAGSPSPMRL GGPQSANNLK SPSSSSLSPP GRKNGLPSPP
501: VRRRRSLTPA RERGSLSPAG RPVAKSPSHD KQGGSMSPVR GRGRSPPSRH QKARSPVRRR SPKPVTRRSQ RSPSGSRSPD DSRRRRSPSW SRSSSRSPSP
601: PVRRRPPSPS GRKHLRDRRS PGHPSEMRDR EDRDQKSKLS RKQLPETVQE VGRVEHAKAQ ERKSEKLPER RSSHRMHHGS QMSPVSDKDF GRVENVEGKR
701: QRPSQVEKED NSDLDAKLNS DSKDKKRRKT KRSERDEAAS DSNGSSDSDL EDRKEAKRRR KEEKKTKKEE KKRRREERRR KREERRGEKQ KLKNREYSDS
801: SEGEAEKSKN GEESDPKRLE IELRNKALES LKAKKGISH
101: MKELWTLLLS AQSNSSGVPQ QFLDASVAET IKFKEQARKK AEADENNKLV NEIGRRKCYE DDIQGKIDSG VEHKVTNAME AKPSRDRPED ERKVDEKVGG
201: ANERRRGSRS RSISRTNSGS RSSSGGRKSR SLSRSSDASI SPRKRRPSYS RRRSRSRSLS RSLSPRRRRV RSPYGSRSRS PIRRHRSPSP QRRRRVSTPE
301: RRRQSSPPSR RRRSPSPPVR RRRSPSPPAK RRRSPSPSAR RRRSPSPLAR KRRSPSPPVR RRRSPSPPAR RQRSPLPFRR RRSPSPVARR RRSPSPLYRR
401: NRSRSRSPLA KRERSDSPGR SPSLVGSRRA PAGQRLPSPP ARPRLPSPPA GQRLPSPPPR RAGSPSPMRL GGPQSANNLK SPSSSSLSPP GRKNGLPSPP
501: VRRRRSLTPA RERGSLSPAG RPVAKSPSHD KQGGSMSPVR GRGRSPPSRH QKARSPVRRR SPKPVTRRSQ RSPSGSRSPD DSRRRRSPSW SRSSSRSPSP
601: PVRRRPPSPS GRKHLRDRRS PGHPSEMRDR EDRDQKSKLS RKQLPETVQE VGRVEHAKAQ ERKSEKLPER RSSHRMHHGS QMSPVSDKDF GRVENVEGKR
701: QRPSQVEKED NSDLDAKLNS DSKDKKRRKT KRSERDEAAS DSNGSSDSDL EDRKEAKRRR KEEKKTKKEE KKRRREERRR KREERRGEKQ KLKNREYSDS
801: SEGEAEKSKN GEESDPKRLE IELRNKALES LKAKKGISH
001: MSGGFFRGTS AEQDTRFSNK QAKLMKSQKF APELENLVDI TKVKMDVMKP WIATRVTELL GIEDEVLINF IYGLLDGKVV NGKEIQITLT GFMEKNTGKF
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPMRIGGSH AANHLESPSP SSLSPPGRKK
501: VLPSPPVRRR RSLTPDEERV SLSQGGRHTS PSHIKQDGSM SPVRGRGKSS PSSRHQKARS PVRRRSPTPV NRRSRRSSSA SRSPDRRRRR SPSSSRSPSR
601: SRSPPVLHRS PSPRGRKHQR ERRSPGRLSE EQDRVQNSKL LKRTSVPDTD KRKQLPEKLL EVGRVEHYKE QERKSDKLSE KRSVHRHHGS QMSPVENSEG
701: RSRPVSSKVK DSEQVEKEDN SDLDANLSCD SKDTIRHQIK DKNRRKNKRS SREEVSSDDN GSSDSDVDDR KEAKRRRKEE KKTRKEEKKR RREERHRKRE
801: ERRGGKEKHK KQELSDTSEG EVEARPKIKK GEESDPKRLE IELRNKALES LKAKKGISH
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPMRIGGSH AANHLESPSP SSLSPPGRKK
501: VLPSPPVRRR RSLTPDEERV SLSQGGRHTS PSHIKQDGSM SPVRGRGKSS PSSRHQKARS PVRRRSPTPV NRRSRRSSSA SRSPDRRRRR SPSSSRSPSR
601: SRSPPVLHRS PSPRGRKHQR ERRSPGRLSE EQDRVQNSKL LKRTSVPDTD KRKQLPEKLL EVGRVEHYKE QERKSDKLSE KRSVHRHHGS QMSPVENSEG
701: RSRPVSSKVK DSEQVEKEDN SDLDANLSCD SKDTIRHQIK DKNRRKNKRS SREEVSSDDN GSSDSDVDDR KEAKRRRKEE KKTRKEEKKR RREERHRKRE
801: ERRGGKEKHK KQELSDTSEG EVEARPKIKK GEESDPKRLE IELRNKALES LKAKKGISH
Arabidopsis Description
At2g29210/F16P2.41 [Source:UniProtKB/TrEMBL;Acc:Q8L7W3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.