Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P03820_001 | Banana | cytosol | 7.63 | 81.71 |
| CDY65665 | Canola | nucleus | 58.54 | 62.91 |
| CDY45430 | Canola | nucleus | 57.4 | 60.07 |
| Bra018407.1-P | Field mustard | nucleus | 57.74 | 60.07 |
| KRH24737 | Soybean | nucleus | 39.41 | 38.88 |
| KRH29744 | Soybean | nucleus | 40.32 | 38.65 |
| VIT_06s0004g05220.t01 | Wine grape | nucleus | 39.98 | 38.07 |
| Os03t0270200-01 | Rice | nucleus | 35.42 | 37.02 |
| Solyc09g030390.2.1 | Tomato | nucleus | 38.27 | 36.48 |
| PGSC0003DMT400071935 | Potato | nucleus | 36.22 | 36.05 |
| KXG39705 | Sorghum | nucleus | 35.42 | 35.34 |
| Zm00001d028579_P027 | Maize | nucleus | 35.65 | 34.55 |
| TraesCS4B01G209700.1 | Wheat | nucleus | 31.78 | 33.78 |
| TraesCS4A01G094800.1 | Wheat | nucleus | 31.66 | 33.74 |
| TraesCS4D01G210400.1 | Wheat | nucleus | 31.66 | 33.66 |
| HORVU4Hr1G060270.6 | Barley | nucleus | 31.44 | 33.45 |
| GSMUA_Achr10P... | Banana | nucleus | 30.75 | 31.99 |
| Zm00001d047831_P001 | Maize | nucleus | 9.23 | 22.69 |
Protein Annotations
| Gene3D:1.20.1390.10 | MapMan:17.3.1.2.2 | EntrezGene:817470 | ProteinID:AEC08223.1 | ProteinID:ANM62172.1 | ArrayExpress:AT2G29210 |
| EnsemblPlantsGene:AT2G29210 | RefSeq:AT2G29210 | TAIR:AT2G29210 | RefSeq:AT2G29210-TAIR-G | EnsemblPlants:AT2G29210.1 | TAIR:AT2G29210.1 |
| EMBL:AY125501 | Unigene:At.25482 | EMBL:BT000633 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 |
| GO:GO:0009987 | InterPro:IPR002483 | RefSeq:NP_001324350.1 | RefSeq:NP_180484.2 | PFAM:PF01480 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS51025 | InterPro:PWI_dom | InterPro:PWI_dom_sf | UniProt:Q8L7W3 | SMART:SM00311 | SUPFAM:SSF101233 |
| UniParc:UPI00000AC475 | SEG:seg | : | : | : | : |
Description
At2g29210/F16P2.41 [Source:UniProtKB/TrEMBL;Acc:Q8L7W3]
Coordinates
chr2:+:12557979..12562367
Molecular Weight (calculated)
100485.0 Da
IEP (calculated)
12.231
GRAVY (calculated)
-1.565
Length
878 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGFFRGTS AEQDTRFSNK QAKLMKSQKF APELENLVDI TKVKMDVMKP WIATRVTELL GIEDEVLINF IYGLLDGKVV NGKEIQITLT GFMEKNTGKF
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.