CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85408
CDX86235
CDX90483
CDX93546
CDX95043
CDY02176
CDY05631
CDY09638
CDY23090
CDY33903
CDY35590
CDY42967
CDY46740
CDY68533

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02720.1	CDX93546	AT1G08650.1	21798944
AT4G02720.1	CDX95043	AT1G08650.1	21798944
AT4G02720.1	CDY46740	AT1G08650.1	21798944
AT4G02720.1	CDY68533	AT1G08650.1	21798944
AT4G02720.1	CDX90483	AT4G17220.1	21798944
AT4G02720.1	CDY09638	AT4G17220.1	21798944
AT4G02720.1	CDY35590	AT4G17220.1	21798944
AT4G02720.1	CDY42967	AT4G17220.1	21798944
AT4G02720.1	CDX85408	AT5G49400.1	21798944
AT4G02720.1	CDX86235	AT5G49400.1	21798944
AT4G02720.1	CDY05631	AT5G49400.1	21798944
AT4G02720.1	CDY33903	AT5G49400.1	21798944
AT4G02720.1	CDY02176	AT5G61010.1	21798944
AT4G02720.1	CDY23090	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76672	Canola	nucleus	17.15	94.2
CDY11458	Canola	nucleus	17.15	94.2
CDY42264	Canola	nucleus	16.62	91.3
Os09t0455400-01	Rice	cytosol, mitochondrion, nucleus	16.09	81.33
Bra032050.1-P	Field mustard	nucleus	77.84	77.43
CDX91311	Canola	cytosol	19.79	72.12
CDY10535	Canola	nucleus	54.09	58.24
CDY22074	Canola	nucleus	53.3	57.22
CDY21909	Canola	nucleus	53.56	57.18
CDY70496	Canola	nucleus	51.72	53.7
CDY58145	Canola	nucleus	47.76	50.14
AT4G02720.1	Thale cress	nucleus	47.49	42.65
KRH32028	Soybean	nucleus	44.59	34.7
GSMUA_Achr9P15340_001	Banana	nucleus	42.48	33.97
KRH71411	Soybean	nucleus	44.06	33.53
HORVU5Hr1G068120.2	Barley	nucleus	41.42	32.71
VIT_07s0151g00910.t01	Wine grape	nucleus	40.11	32.41
Zm00001d020706_P001	Maize	mitochondrion, nucleus, plastid	41.42	31.46
KXG35759	Sorghum	nucleus	41.95	30.87
TraesCS5A01G237400.1	Wheat	plastid	41.95	30.29
TraesCS5B01G235300.1	Wheat	plastid	41.42	30.02
Solyc11g071660.1.1	Tomato	nucleus	41.16	29.16
TraesCS5D01G244100.1	Wheat	mitochondrion, nucleus, plastid	41.16	29.16
PGSC0003DMT400097185	Potato	nucleus	41.16	29.05
HORVU5Hr1G068130.1	Barley	nucleus, plastid	41.69	28.32

Protein Annotations

MapMan:17.1.1.1.3	UniProt:A0A078IWT8	EnsemblPlants:CDY53463	ProteinID:CDY53463	ProteinID:CDY53463.1	GO:GO:0003674
GO:GO:0003682	GO:GO:0005488	GO:GO:0006139	GO:GO:0007154	GO:GO:0007165	GO:GO:0007219
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	EnsemblPlantsGene:GSBRNA2T00010782001
InterPro:NKAP	PFAM:PF06047	PANTHER:PTHR13087	PANTHER:PTHR13087:SF0	UniParc:UPI0004EF370C	SEG:seg

Description

BnaA04g28040DBnaA04g28040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWT8]

Coordinates

chrLK033206:+:20956..22302

Molecular Weight (calculated)

43783.9 Da

IEP (calculated)

10.172

GRAVY (calculated)

-1.562

Length

379 amino acids

Sequence
(BLAST)

001: MLAGVIRWKD TLVVVALGMK NQGQVYEGRR RGWDSSSGLS YEEYRRLKRI KMRNTPRDPN EDERDDDDDD DSDSESVESD SDEEDRRRQR RSRRKIKSKS
101: SRRSSYDSDS EDRKLGRKRK KSTSIRKKRR YSDSESEISG DEQQHTESKI KRRKKKLLSG DEEDRGRRTS KKKKTSTKKR GHRSASGEER SKRRKKLSGD
201: GTDTDLKAKL EEKVKDTELG EEEELKKLRE MVNNESKKKS LAPEEDEEAE VGPKAEGHRG YGPALRPGEG DAIAQYVQQG KRIPRRGEVG LNADEIQRFE
301: DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLSRLVQRH MGEELGPNHD PFGAGKADD

Best Arabidopsis Sequence Match ( AT4G02720.1 )
(BLAST)

001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD

Arabidopsis Description

AT4g02720/T10P11_1 [Source:UniProtKB/TrEMBL;Acc:Q8S9I4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.