Factsheet for TraesCS5D01G244100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G381600.1
TraesCS2B01G398900.1
TraesCS2D01G378100.1
TraesCS3A01G302600.1
TraesCS3B01G333800.1
TraesCS3D01G299200.1
TraesCS4A01G078900.2
TraesCS4B01G245400.1
TraesCS4D01G244000.1
TraesCS5A01G022300.1
TraesCS6A01G223500.1
TraesCS6A01G375800.1
TraesCS6A01G375900.1
TraesCS6B01G257800.1
TraesCS6B01G413500.1
TraesCS6B01G413600.1
TraesCS6D01G211900.1
TraesCS6D01G360800.1
TraesCS6D01G360900.1
TraesCS7A01G422700.1
TraesCS7B01G323100.1
TraesCS7D01G415100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02720.1	TraesCS2A01G381600.1	AT1G08650.1	21798944
AT4G02720.1	TraesCS2B01G398900.1	AT1G08650.1	21798944
AT4G02720.1	TraesCS2D01G378100.1	AT1G08650.1	21798944
AT4G02720.1	TraesCS6A01G223500.1	AT1G08650.1	21798944
AT4G02720.1	TraesCS6A01G375800.1	AT1G08650.1	21798944
AT4G02720.1	TraesCS6A01G375900.1	AT1G08650.1	21798944
AT4G02720.1	TraesCS6B01G257800.1	AT1G08650.1	21798944
AT4G02720.1	TraesCS6B01G413500.1	AT1G08650.1	21798944
AT4G02720.1	TraesCS6B01G413600.1	AT1G08650.1	21798944
AT4G02720.1	TraesCS6D01G211900.1	AT1G08650.1	21798944
AT4G02720.1	TraesCS6D01G360800.1	AT1G08650.1	21798944
AT4G02720.1	TraesCS6D01G360900.1	AT1G08650.1	21798944
AT4G02720.1	TraesCS4A01G078900.2	AT4G17220.1	21798944
AT4G02720.1	TraesCS4B01G245400.1	AT4G17220.1	21798944
AT4G02720.1	TraesCS4D01G244000.1	AT4G17220.1	21798944
AT4G02720.1	TraesCS5A01G022300.1	AT5G49400.1	21798944
AT4G02720.1	TraesCS7A01G422700.1	AT5G49400.1	21798944
AT4G02720.1	TraesCS7B01G323100.1	AT5G49400.1	21798944
AT4G02720.1	TraesCS7D01G415100.1	AT5G49400.1	21798944
AT4G02720.1	TraesCS3A01G302600.1	AT5G61010.1	21798944
AT4G02720.1	TraesCS3B01G333800.1	AT5G61010.1	21798944
AT4G02720.1	TraesCS3D01G299200.1	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G235300.1	Wheat	plastid	95.14	97.32
TraesCS5A01G237400.1	Wheat	plastid	95.14	96.95
Os09t0455400-01	Rice	cytosol, mitochondrion, nucleus	12.9	92.0
HORVU5Hr1G068130.1	Barley	nucleus, plastid	94.95	91.04
HORVU5Hr1G068120.2	Barley	nucleus	77.38	86.25
CDX76672	Canola	nucleus	9.35	72.46
CDY11458	Canola	nucleus	9.35	72.46
CDY42264	Canola	nucleus	9.35	72.46
Zm00001d020706_P001	Maize	mitochondrion, nucleus, plastid	67.29	72.14
KXG35759	Sorghum	nucleus	69.16	71.84
CDX91311	Canola	cytosol	11.21	57.69
GSMUA_Achr9P15340_001	Banana	nucleus	47.48	53.59
CDY10535	Canola	nucleus	34.39	52.27
CDY22074	Canola	nucleus	34.02	51.56
CDY21909	Canola	nucleus	34.21	51.55
Bra007711.1-P	Field mustard	nucleus	28.6	50.83
Bra036246.1-P	Field mustard	nucleus	34.39	50.0
KRH32028	Soybean	nucleus	44.86	49.28
KRH71411	Soybean	nucleus	45.23	48.59
VIT_07s0151g00910.t01	Wine grape	nucleus	41.12	46.91
AT4G02720.1	Thale cress	nucleus	36.26	45.97
CDY70496	Canola	nucleus	30.84	45.21
CDY58145	Canola	nucleus	30.47	45.15
Bra032050.1-P	Field mustard	nucleus	30.28	42.52
PGSC0003DMT400097185	Potato	nucleus	41.68	41.53
Solyc11g071660.1.1	Tomato	nucleus	41.31	41.31
CDY53463	Canola	nucleus	29.16	41.16
TraesCS7D01G263500.1	Wheat	plastid	21.5	37.95

Protein Annotations

MapMan:17.1.1.1.3	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005731	GO:GO:0006139	GO:GO:0006259
GO:GO:0007154	GO:GO:0007165	GO:GO:0007219	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0044030	GO:GO:0045892	GO:GO:2000232	InterPro:NKAP	PFAM:PF06047
PANTHER:PTHR13087	PANTHER:PTHR13087:SF0	EnsemblPlantsGene:TraesCS5D01G244100	EnsemblPlants:TraesCS5D01G244100.1	SEG:seg	:

Description

No Description!

Coordinates

chr5D:+:352692939..352694546

Molecular Weight (calculated)

61628.9 Da

IEP (calculated)

10.411

GRAVY (calculated)

-1.624

Length

535 amino acids

Sequence
(BLAST)

001: MSRTGSRLAS AVVRHPDRSR VSASPSPRRR SLSPSPSPRR QRRRDRSPIP SRDRRGERSP VPSRDRRRDR SPSPYRDRRR DRSPSPFRDR RRDRSPSPFR
101: DRRRQWSPYH NERGRDMDRV RDVEPPARRG GGGGGEWSAS DDDDEDLKGL TYFEYRRVKR QKLRKSLKKC IWKVTPSPPR RDDEADEYQY SEEEEEEKKE
201: SPKKESSEKS DEENKDSSES ETDESGSLSD SSESDYSSKK KKGRKGRRSS SKRSRRAHRR HRKSDAESES DSKVDEDSEG SYDSEDSRDK KRSKRSRRHK
301: KSKRRGRSSR RKKSKSLDVP SDVSSEEVEV LVSSPISTDS KKMGKSSRKK NSSQSDSEDS IPSDAIIDEK EIEETDEPEI DPEAIKFKEM LEAQKKAALE
401: NEMPVGPMPL PRADGHISYG GALRPGEGDA IAQYVQQGKR IPRRGEVGLS ADEIQKFEDL GYVMSGSRHQ RMNAIRIRKE NQVYSAEDKR ALAMFNYEEK
501: SKREHKVMAD LQRLVSRTIG QETGPSHDPF ATTDD

Best Arabidopsis Sequence Match ( AT4G02720.1 )
(BLAST)

001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD

Arabidopsis Description

AT4g02720/T10P11_1 [Source:UniProtKB/TrEMBL;Acc:Q8S9I4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.