Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76672 | Canola | nucleus | 14.93 | 91.3 |
| CDY11458 | Canola | nucleus | 14.93 | 91.3 |
| CDY42264 | Canola | nucleus | 14.22 | 86.96 |
| Os09t0455400-01 | Rice | cytosol, mitochondrion, nucleus | 14.46 | 81.33 |
| CDX91311 | Canola | cytosol | 16.82 | 68.27 |
| CDY22074 | Canola | nucleus | 56.64 | 67.71 |
| CDY10535 | Canola | nucleus | 55.45 | 66.48 |
| CDY21909 | Canola | nucleus | 55.69 | 66.2 |
| Bra036246.1-P | Field mustard | nucleus | 56.4 | 64.67 |
| Bra007711.1-P | Field mustard | nucleus | 44.55 | 62.46 |
| CDY58145 | Canola | nucleus | 47.16 | 55.12 |
| CDY70496 | Canola | nucleus | 46.92 | 54.25 |
| Bra032050.1-P | Field mustard | nucleus | 43.36 | 48.03 |
| CDY53463 | Canola | nucleus | 42.65 | 47.49 |
| KRH71411 | Soybean | nucleus | 51.9 | 43.98 |
| KRH32028 | Soybean | nucleus | 50.0 | 43.33 |
| VIT_07s0151g00910.t01 | Wine grape | nucleus | 45.5 | 40.94 |
| GSMUA_Achr9P15340_001 | Banana | nucleus | 45.73 | 40.72 |
| HORVU5Hr1G068120.2 | Barley | nucleus | 46.21 | 40.62 |
| TraesCS5A01G237400.1 | Wheat | plastid | 46.92 | 37.71 |
| TraesCS5B01G235300.1 | Wheat | plastid | 46.68 | 37.67 |
| KXG35759 | Sorghum | nucleus | 45.73 | 37.48 |
| Zm00001d020706_P001 | Maize | mitochondrion, nucleus, plastid | 44.31 | 37.47 |
| PGSC0003DMT400097185 | Potato | nucleus | 46.45 | 36.5 |
| Solyc11g071660.1.1 | Tomato | nucleus | 45.97 | 36.26 |
| TraesCS5D01G244100.1 | Wheat | mitochondrion, nucleus, plastid | 45.97 | 36.26 |
| HORVU5Hr1G068130.1 | Barley | nucleus, plastid | 46.21 | 34.95 |
Protein Annotations
| MapMan:17.1.1.1.3 | EntrezGene:828193 | ProteinID:AEE82218.1 | ArrayExpress:AT4G02720 | EnsemblPlantsGene:AT4G02720 | RefSeq:AT4G02720 |
| TAIR:AT4G02720 | RefSeq:AT4G02720-TAIR-G | EnsemblPlants:AT4G02720.1 | TAIR:AT4G02720.1 | EMBL:AY075686 | EMBL:AY102143 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003682 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005731 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007219 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0044030 | GO:GO:0045892 | GO:GO:2000232 | InterPro:NKAP | RefSeq:NP_192181.2 |
| PFAM:PF06047 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR13087 |
| PANTHER:PTHR13087:SF0 | UniProt:Q8S9I4 | UniParc:UPI000009F3F3 | SEG:seg | : | : |
Description
AT4g02720/T10P11_1 [Source:UniProtKB/TrEMBL;Acc:Q8S9I4]
Coordinates
chr4:-:1204089..1205892
Molecular Weight (calculated)
48465.4 Da
IEP (calculated)
9.470
GRAVY (calculated)
-1.718
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.