Factsheet for Zm00001d020706_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003068_P001
Zm00001d006930_P001
Zm00001d017270_P001
Zm00001d018429_P001
Zm00001d022296_P001
Zm00001d028219_P001
Zm00001d043365_P001
Zm00001d051156_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02720.1	Zm00001d003068_P001	AT1G08650.1	21798944
AT4G02720.1	Zm00001d017270_P001	AT1G08650.1	21798944
AT4G02720.1	Zm00001d018429_P001	AT1G08650.1	21798944
AT4G02720.1	Zm00001d051156_P001	AT1G08650.1	21798944
AT4G02720.1	Zm00001d028219_P001	AT4G17220.1	21798944
AT4G02720.1	Zm00001d006930_P001	AT5G49400.1	21798944
AT4G02720.1	Zm00001d022296_P001	AT5G49400.1	21798944
AT4G02720.1	Zm00001d043365_P001	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0455400-01	Rice	cytosol, mitochondrion, nucleus	14.63	97.33
KXG35759	Sorghum	nucleus	94.19	91.26
CDY42264	Canola	nucleus	9.82	71.01
CDY11458	Canola	nucleus	9.82	71.01
CDX76672	Canola	nucleus	9.82	71.01
TraesCS5B01G235300.1	Wheat	plastid	72.34	69.02
TraesCS5A01G237400.1	Wheat	plastid	72.34	68.76
TraesCS5D01G244100.1	Wheat	mitochondrion, nucleus, plastid	72.14	67.29
HORVU5Hr1G068130.1	Barley	nucleus, plastid	71.34	63.8
HORVU5Hr1G068120.2	Barley	nucleus	58.12	60.42
CDX91311	Canola	cytosol	12.02	57.69
GSMUA_Achr9P15340_001	Banana	nucleus	51.9	54.64
CDY10535	Canola	nucleus	36.67	51.99
CDY22074	Canola	nucleus	36.67	51.84
CDY21909	Canola	nucleus	36.67	51.55
Bra036246.1-P	Field mustard	nucleus	37.27	50.54
Bra007711.1-P	Field mustard	nucleus	29.86	49.5
KRH32028	Soybean	nucleus	48.3	49.49
KRH71411	Soybean	nucleus	48.3	48.39
VIT_07s0151g00910.t01	Wine grape	nucleus	44.49	47.33
CDY58145	Canola	nucleus	32.26	44.6
AT4G02720.1	Thale cress	nucleus	37.47	44.31
CDY70496	Canola	nucleus	31.46	43.01
CDY53463	Canola	nucleus	31.46	41.42
PGSC0003DMT400097185	Potato	nucleus	43.89	40.78
Solyc11g071660.1.1	Tomato	nucleus	43.49	40.56
Bra032050.1-P	Field mustard	nucleus	30.66	40.16

Protein Annotations

EntrezGene:100191706	MapMan:17.1.1.1.3	UniProt:B4F9V3	EMBL:BT033891	EMBL:BT037599	EMBL:BT061865
EMBL:BT067624	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005731	GO:GO:0006139	GO:GO:0006259
GO:GO:0007154	GO:GO:0007165	GO:GO:0007219	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0044030	GO:GO:0045892	GO:GO:2000232	InterPro:NKAP	ProteinID:ONM55432.1
PFAM:PF06047	PANTHER:PTHR13087	PANTHER:PTHR13087:SF0	UniParc:UPI00017B62FE	EnsemblPlantsGene:Zm00001d020706	EnsemblPlants:Zm00001d020706_P001
EnsemblPlants:Zm00001d020706_T001	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:+:129499980..129501479

Molecular Weight (calculated)

57782.6 Da

IEP (calculated)

10.504

GRAVY (calculated)

-1.625

Length

499 amino acids

Sequence
(BLAST)

001: MSRSERRLAS AVVRLPGRSR VSASPSPRRR SQSPSPRRDR RRRDRSPIPY RDRSPSPYRA RRRDRSPSPY RDRRDRSPSP YRDRRRQWSP YHNDRGRDRD
101: RVLPVRSGGG AWSDDDDDDK ELQGLSYFEY RRLKRQKLRK SKKRCIWNIT PSPPRVEGDE ENYGYSDVEE EKVSPKASPE ASEEESKDAS ESESGESDSL
201: SESSGSEASM RKKKGRNKSR RSSKRSRQRH RHRSYSSEIE DESKSDDDSV GSYDSEESRD RSKKRSRRHN RSKKRSRSSR RKKRRSQDTA SEQSSEEEEE
301: EDSKKKNKGL KRKRSKRSDS EESVPSDATP DDVKEIEETK VPEIDPEAIK FKEILEAQKK ASLENDMPVG PMPLPRAEGH ISYGGALRPG EGDAIAQYVQ
401: QGKRIPRRGE VGLSAEEIQK FEDLGYVMSG SRHQRMNAIR IRKENQVYSA EDKRALAMFN YEEKSKREHK VMADLQRLVQ RTIGHDVGPS HDPFATTDG

Best Arabidopsis Sequence Match ( AT4G02720.1 )
(BLAST)

001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD

Arabidopsis Description

AT4g02720/T10P11_1 [Source:UniProtKB/TrEMBL;Acc:Q8S9I4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.