Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G237400.1 | Wheat | plastid | 96.75 | 96.38 |
| TraesCS5D01G244100.1 | Wheat | mitochondrion, nucleus, plastid | 97.32 | 95.14 |
| Os09t0455400-01 | Rice | cytosol, mitochondrion, nucleus | 13.19 | 92.0 |
| HORVU5Hr1G068130.1 | Barley | nucleus, plastid | 96.18 | 90.14 |
| HORVU5Hr1G068120.2 | Barley | nucleus | 79.73 | 86.88 |
| CDX76672 | Canola | nucleus | 9.56 | 72.46 |
| CDY11458 | Canola | nucleus | 9.56 | 72.46 |
| CDY42264 | Canola | nucleus | 9.56 | 72.46 |
| Zm00001d020706_P001 | Maize | mitochondrion, nucleus, plastid | 69.02 | 72.34 |
| KXG35759 | Sorghum | nucleus | 69.79 | 70.87 |
| CDX91311 | Canola | cytosol | 11.47 | 57.69 |
| GSMUA_Achr9P15340_001 | Banana | nucleus | 48.95 | 54.01 |
| CDY10535 | Canola | nucleus | 35.56 | 52.84 |
| CDY21909 | Canola | nucleus | 35.37 | 52.11 |
| CDY22074 | Canola | nucleus | 34.99 | 51.84 |
| Bra007711.1-P | Field mustard | nucleus | 29.25 | 50.83 |
| Bra036246.1-P | Field mustard | nucleus | 35.56 | 50.54 |
| KRH32028 | Soybean | nucleus | 46.08 | 49.49 |
| KRH71411 | Soybean | nucleus | 46.85 | 49.2 |
| AT4G02720.1 | Thale cress | nucleus | 37.67 | 46.68 |
| VIT_07s0151g00910.t01 | Wine grape | nucleus | 41.49 | 46.27 |
| CDY58145 | Canola | nucleus | 31.74 | 45.98 |
| CDY70496 | Canola | nucleus | 31.74 | 45.48 |
| Bra032050.1-P | Field mustard | nucleus | 31.36 | 43.04 |
| PGSC0003DMT400097185 | Potato | nucleus | 42.64 | 41.53 |
| CDY53463 | Canola | nucleus | 30.02 | 41.42 |
| Solyc11g071660.1.1 | Tomato | nucleus | 42.26 | 41.31 |
| TraesCS7B01G160600.1 | Wheat | nucleus, plastid | 22.18 | 39.19 |
Protein Annotations
| MapMan:17.1.1.1.3 | GO:GO:0003674 | GO:GO:0003682 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005731 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007219 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0044030 | GO:GO:0045892 | GO:GO:2000232 | InterPro:NKAP | PFAM:PF06047 |
| PANTHER:PTHR13087 | PANTHER:PTHR13087:SF0 | EnsemblPlantsGene:TraesCS5B01G235300 | EnsemblPlants:TraesCS5B01G235300.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr5B:+:415648253..415649824
Molecular Weight (calculated)
60040.0 Da
IEP (calculated)
10.379
GRAVY (calculated)
-1.592
Length
523 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRTGSRLAS SVVRLPGRSR VSASPSPRRR SLSPSPSPRR QRRRDRSPIP SRDRRGERSP VPSRDRRRDR SPSPYRDRRR DRSPSPFRDR RRQWSPYHNE
101: RGRDMDRVRD VEPPARRGGG GGGEWSASDD DDEDLKGLTY FEYRRVKRQK LRKSLKKCIW KVTPSPPRRD DEADEYQYSE EEEEKKESPK KDSSEKSDVE
201: ENKDSSESES DESGSLSDSS ESDYSRKKKK GRKDRRSSSK RSRRSHRRHR KSDVESESDS KVDEDSEGSY DSEDSRDKKR SKRSRRHKKS KRRGRSSRRK
301: KSKSLDVPSD VSSEEVEVLG SSPISTDSKK TGKSSRKKSS SQSDSEDSIS SDAIIDEKEI EETDEPEIDP EAIKFKEMLE AQKKAALENE MPVGPMPLPR
401: ADGHISYGGA LRPGEGDAIA QYVQQGKRIP RRGEVGLSAD EIQKFEDLGY VMSGSRHQRM NAIRIRKENQ VYSAEDKRAL AMFNYEEKSK REHKVMADLQ
501: RLVSRTIGQE TGPSHDPFAT TDD
101: RGRDMDRVRD VEPPARRGGG GGGEWSASDD DDEDLKGLTY FEYRRVKRQK LRKSLKKCIW KVTPSPPRRD DEADEYQYSE EEEEKKESPK KDSSEKSDVE
201: ENKDSSESES DESGSLSDSS ESDYSRKKKK GRKDRRSSSK RSRRSHRRHR KSDVESESDS KVDEDSEGSY DSEDSRDKKR SKRSRRHKKS KRRGRSSRRK
301: KSKSLDVPSD VSSEEVEVLG SSPISTDSKK TGKSSRKKSS SQSDSEDSIS SDAIIDEKEI EETDEPEIDP EAIKFKEMLE AQKKAALENE MPVGPMPLPR
401: ADGHISYGGA LRPGEGDAIA QYVQQGKRIP RRGEVGLSAD EIQKFEDLGY VMSGSRHQRM NAIRIRKENQ VYSAEDKRAL AMFNYEEKSK REHKVMADLQ
501: RLVSRTIGQE TGPSHDPFAT TDD
001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD
Arabidopsis Description
AT4g02720/T10P11_1 [Source:UniProtKB/TrEMBL;Acc:Q8S9I4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.