Factsheet for Solyc11g071660.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g060030.2.1
Solyc03g115070.1.1
Solyc04g009900.2.1
Solyc04g009910.2.1
Solyc04g015010.2.1
Solyc05g055050.1.1
Solyc11g012660.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02720.1	Solyc04g009900.2.1	AT1G08650.1	21798944
AT4G02720.1	Solyc04g009910.2.1	AT1G08650.1	21798944
AT4G02720.1	Solyc05g055050.1.1	AT1G08650.1	21798944
AT4G02720.1	Solyc04g015010.2.1	AT4G17220.1	21798944
AT4G02720.1	Solyc11g012660.1.1	AT4G17220.1	21798944
AT4G02720.1	Solyc01g060030.2.1	AT5G49400.1	21798944
AT4G02720.1	Solyc03g115070.1.1	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400097185	Potato	nucleus	96.26	95.9
Os09t0455400-01	Rice	cytosol, mitochondrion, nucleus	11.78	84.0
CDX76672	Canola	nucleus	9.16	71.01
CDY11458	Canola	nucleus	9.16	71.01
CDY42264	Canola	nucleus	9.16	71.01
CDX91311	Canola	cytosol	11.03	56.73
CDY22074	Canola	nucleus	35.51	53.82
CDY10535	Canola	nucleus	35.14	53.41
CDY21909	Canola	nucleus	35.33	53.24
Bra036246.1-P	Field mustard	nucleus	35.89	52.17
Bra007711.1-P	Field mustard	nucleus	28.22	50.17
VIT_07s0151g00910.t01	Wine grape	nucleus	43.74	49.89
KRH32028	Soybean	nucleus	44.86	49.28
KRH71411	Soybean	nucleus	45.42	48.8
AT4G02720.1	Thale cress	nucleus	36.26	45.97
GSMUA_Achr9P15340_001	Banana	nucleus	39.44	44.51
CDY58145	Canola	nucleus	29.72	44.04
Zm00001d020706_P001	Maize	mitochondrion, nucleus, plastid	40.56	43.49
KXG35759	Sorghum	nucleus	40.75	42.33
TraesCS5B01G235300.1	Wheat	plastid	41.31	42.26
TraesCS5A01G237400.1	Wheat	plastid	41.31	42.1
TraesCS5D01G244100.1	Wheat	mitochondrion, nucleus, plastid	41.31	41.31
HORVU5Hr1G068120.2	Barley	nucleus	37.01	41.25
CDY53463	Canola	nucleus	29.16	41.16
CDY70496	Canola	nucleus	27.85	40.82
Bra032050.1-P	Field mustard	nucleus	28.79	40.42
HORVU5Hr1G068130.1	Barley	nucleus, plastid	40.93	39.25

Protein Annotations

MapMan:17.1.1.1.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005731	GO:GO:0006139
GO:GO:0006259	GO:GO:0007154	GO:GO:0007165	GO:GO:0007219	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0044030	GO:GO:0045892	GO:GO:2000232	UniProt:K4DAM3
InterPro:NKAP	PFAM:PF06047	PANTHER:PTHR13087	PANTHER:PTHR13087:SF0	EnsemblPlantsGene:Solyc11g071660.1	EnsemblPlants:Solyc11g071660.1.1
UniParc:UPI0002769824	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:-:55070867..55072474

Molecular Weight (calculated)

61251.2 Da

IEP (calculated)

10.382

GRAVY (calculated)

-1.638

Length

535 amino acids

Sequence
(BLAST)

001: MGRLSSAVEI PDDRHRSHRN GDGGRYSPQR SSHYDNRRRY RSPSRSRSPI RNRNRNRSLS RSVSGSRSRS PAYSPYRSQQ ASHTNGRSNR RSFSPDRSYR
101: RPSPTNEPPR RFGRGKKPYL DRDHKSGRTA DSDSDEELKG LSFEEYRRLK RQKLRKQLKN CIWNCTPSPP RKENEPEYEE PDEIAEKIED EMVKKEDGSK
201: KDVKRSKTKS SGSEPDSESE SDASDSDSEA SDSEPRKSRK RKKSSSKRRS RRSRRKSVSE SEEESTDDSS SEEERNKRRK KSRRKESSRR HKRGSSSRKK
301: RSKRKSYSSE SESKSKSESE DGEIDDSDAS KKQKSALKSK RKKEGDSDIP EKSLELSDDA GINETKADEA MIDEVNGEVL EFKELIEARK RSNFEDEAPV
401: GPMPLPRAEG HISYGGALRP GEGDAIAQYV QQGKRIPRRG EVGLSADEIS KFEGLGYVMS GSRHQRMNAI RIRKENQVYS AEDKRALAMF NYEEKAKREQ
501: KVMADLQRLV QRHIGQDTET SHDPFGGKST EAADD

Best Arabidopsis Sequence Match ( AT4G02720.1 )
(BLAST)

001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD

Arabidopsis Description

AT4g02720/T10P11_1 [Source:UniProtKB/TrEMBL;Acc:Q8S9I4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.