Factsheet for Solyc11g012660.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005330.2.1
Solyc01g073920.2.1
Solyc02g082100.2.1
Solyc02g091710.2.1
Solyc03g095610.2.1
Solyc04g008040.2.1
Solyc05g017980.2.1
Solyc06g009750.2.1
Solyc07g052050.1.1
Solyc07g052190.1.1
Solyc08g005910.2.1
Solyc08g022030.2.1
Solyc09g065280.2.1
Solyc10g005220.2.1
Solyc10g080400.1.1
Solyc10g083190.1.1
Solyc12g096260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17220.1	Solyc07g052050.1.1	AT1G03140.1	21798944
AT4G17220.1	Solyc07g052190.1.1	AT1G03140.1	21798944
AT4G17220.1	Solyc09g065280.2.1	AT1G03140.1	21798944
AT4G17220.1	Solyc02g082100.2.1	AT1G30860.1	21798944
AT4G17220.1	Solyc10g005220.2.1	AT1G30860.1	21798944
AT4G17220.1	Solyc01g005330.2.1	AT1G68060.1	21798944
AT4G17220.1	Solyc04g008040.2.1	AT1G68060.1	21798944
AT4G17220.1	Solyc05g017980.2.1	AT1G68060.1	21798944
AT4G17220.1	Solyc02g091710.2.1	AT2G22680.1	21798944
AT4G17220.1	Solyc01g073920.2.1	AT2G32840.1	21798944
AT4G17220.1	Solyc10g080400.1.1	AT2G42260.1	21798944
AT4G17220.1	Solyc10g083190.1.1	AT3G11590.1	21798944
AT4G17220.1	Solyc06g009750.2.1	AT4G02150.1	21798944
AT4G17220.1	Solyc08g022030.2.1	AT4G32190.1	21798944
AT4G17220.1	Solyc03g095610.2.1	AT5G05190.1	21798944
AT4G17220.1	Solyc08g005910.2.1	AT5G61230.1	21798944
AT4G17220.1	Solyc12g096260.1.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034592	Potato	cytosol	43.75	93.16
Solyc04g015010.2.1	Tomato	cytosol	58.75	67.56
Solyc12g021250.1.1	Tomato	cytosol	13.57	56.3
CDX90483	Canola	cytosol	49.46	55.07
Bra026236.1-P	Field mustard	cytosol	48.75	54.93
CDY09638	Canola	cytosol	49.29	54.87
CDY35590	Canola	cytosol	50.0	54.47
CDY42967	Canola	cytosol, nucleus, plasma membrane	48.57	54.4
KRH11576	Soybean	cytosol	55.0	53.94
KRH36588	Soybean	cytosol	55.0	53.94
VIT_00s0194g00260.t01	Wine grape	cytosol	56.25	53.94
AT4G17220.1	Thale cress	cytosol	49.29	53.8
KRH01966	Soybean	mitochondrion	52.32	51.95
KRH51187	Soybean	cytosol	51.61	50.44
GSMUA_Achr7P26720_001	Banana	cytosol	45.89	49.9
Solyc04g008040.2.1	Tomato	nucleus	47.32	42.95
EER95273	Sorghum	cytosol	38.75	42.47
Solyc05g017980.2.1	Tomato	cytosol	46.96	42.28
Zm00001d028219_P001	Maize	cytosol	38.39	42.07
Os03t0215700-01	Rice	cytosol	38.57	41.94
Solyc01g005330.2.1	Tomato	cytosol	46.25	41.64
TraesCS4B01G245400.1	Wheat	nucleus	38.21	40.3
TraesCS4A01G078900.2	Wheat	nucleus	37.68	39.74
HORVU4Hr1G067630.12	Barley	nucleus	36.79	39.24
TraesCS4D01G244000.1	Wheat	nucleus	36.25	38.23

Protein Annotations

EnsemblPlants:Solyc11g012660.1.1	EnsemblPlantsGene:Solyc11g012660.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007010
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:MAP70	ncoils:Coil
PANTHER:PTHR31246	PANTHER:PTHR31246:SF5	PFAM:PF07058	UniParc:UPI000276A101	UniProt:K4D670	MapMan:35.1

Description

No Description!

Coordinates

chr11:+:5432721..5437270

Molecular Weight (calculated)

64494.6 Da

IEP (calculated)

8.734

GRAVY (calculated)

-0.917

Length

560 amino acids

Sequence
(BLAST)

001: MAEFDEFRDE EHYFVGHHSD VVIFELNSLQ NQLKEKDREL GAAQSEIKAL KATDTLKDKA LEELGSKVQK LEEKMKISEN LLEQKNLDIK NLSNEKKEAL
101: AAQYAAESTL RRVYADQKDD DSPPIESIIA PLEADIKMYK NEIAALQEDI RALERQNKSK EAALLEAERI LKSALERALI VEEVQNHNFE LRRQIEICQE
201: EYKILDKTNR QKILEVERLT QTIKELEETI LAGGAAANKI RDCQRQISEL QEEKRTLERE LARLKISANR VATVVANEWK DENDKVMPVK QWLEERKLLQ
301: AEMQRLRNKL VKSERTAKAE AQIKDKLKLR LRTLEEGLKQ STSVFVTPNG SPKPQKTNHL FSILSSNAGL KKRSTSQPRA STINRSSENR RDDAWKQFNK
401: KGSGDSLVKK SLWAYRNKDA EKENAEIKEN SNGHIYSKEM TDTQKIKNRV GDHEDNKNTG SNESNDNDMV SGLLYDMLQK EVLCLRKFCE TKESALNAKD
501: EEIKMLMKKI DTLNKAIEVE SRKMKRESAI RERDSVSSIK TDDNVRSRNS LTSSVRVKTY

Best Arabidopsis Sequence Match ( AT4G17220.1 )
(BLAST)

001: MTAAENPFVS DTSSLQSQLK EKEKELLAAK AEVEALRTNE ELKDRVFKEL RENVRKLEEK LGATENQVDQ KELERKKLEE EKEDALAAQD AAEEALRRVY
101: THQQDDDSLP LESIIAPLES QIKIHKHEIS ALQEDKKALE RLTKSKESAL LEAERILRSA LERALIVEEV QNHNFELRRQ IEICQDENKF LEKINRQKVL
201: EIEKLSQSIV ELEEAILAGG TAANAVRDYR RQISQLNDEK RTLERELARV KVSASRVALA VANEWKDEND RVMPVKQWLE ERRILHGEMQ KLKDKLAVSE
301: RTAKAESQLK ERLKLRLKTI EDGLKGPNTF FVSPTTKTEK SGKILGFLTS GGGSKKRSSS QLRGSVTGRI HAMNQPIDRV GESDEMENSK ITANGLTDQH
401: EEDSERKTEE DGNVYSEDMV SGFLYDRLQK EVIALRKLCE SKEGTINAKN EEIKMLLKKV DALTKAIEVE TKKAKREAAA REKENALAML NEESKLCRKA
501: KLPRSRIPNP RCQ

Arabidopsis Description

MAP70.5Microtubule-associated protein 70-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYX3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.