Factsheet for VIT_00s0194g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g00340.t01
VIT_01s0011g05790.t01
VIT_02s0087g00100.t01
VIT_04s0008g05610.t01
VIT_07s0005g01100.t01
VIT_07s0151g01010.t01
VIT_07s0205g00030.t01
VIT_08s0007g02790.t01
VIT_08s0007g07790.t01
VIT_11s0016g04610.t01
VIT_13s0067g03220.t01
VIT_13s0156g00270.t01
VIT_18s0001g10130.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17220.1	VIT_07s0151g01010.t01	AT1G03140.1	21798944
AT4G17220.1	VIT_01s0010g00340.t01	AT1G30860.1	21798944
AT4G17220.1	VIT_01s0011g05790.t01	AT1G68060.1	21798944
AT4G17220.1	VIT_07s0205g00030.t01	AT2G22680.1	21798944
AT4G17220.1	VIT_13s0156g00270.t01	AT2G32840.1	21798944
AT4G17220.1	VIT_08s0007g07790.t01	AT2G42260.1	21798944
AT4G17220.1	VIT_08s0007g02790.t01	AT3G11590.1	21798944
AT4G17220.1	VIT_07s0005g01100.t01	AT4G02150.1	21798944
AT4G17220.1	VIT_04s0008g05610.t01	AT4G32190.1	21798944
AT4G17220.1	VIT_13s0067g03220.t01	AT5G05190.1	21798944
AT4G17220.1	VIT_11s0016g04610.t01	AT5G19960.1	21798944
AT4G17220.1	VIT_18s0001g10130.t01	AT5G52010.1	21798944
AT4G17220.1	VIT_02s0087g00100.t01	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034592	Potato	cytosol	34.42	76.43
Solyc04g015010.2.1	Tomato	cytosol	50.86	60.99
PGSC0003DMT400038827	Potato	cytosol	51.71	59.8
KRH36588	Soybean	cytosol	58.39	59.72
KRH11576	Soybean	cytosol	58.22	59.54
KRH51187	Soybean	cytosol	58.39	59.51
KRH01966	Soybean	mitochondrion	57.19	59.22
CDX90483	Canola	cytosol	49.32	57.26
CDY09638	Canola	cytosol	48.97	56.86
CDY42967	Canola	cytosol, nucleus, plasma membrane	48.63	56.8
Bra026236.1-P	Field mustard	cytosol	48.29	56.74
AT4G17220.1	Thale cress	cytosol	49.49	56.34
Solyc11g012660.1.1	Tomato	nucleus	53.94	56.25
CDY35590	Canola	cytosol	49.32	56.03
GSMUA_Achr7P26720_001	Banana	cytosol	47.43	53.79
EER95273	Sorghum	cytosol	38.53	44.03
VIT_01s0011g05790.t01	Wine grape	cytosol	47.6	43.64
Zm00001d028219_P001	Maize	cytosol	38.18	43.64
VIT_08s0007g05140.t01	Wine grape	cytosol, plastid	45.03	43.62
Os03t0215700-01	Rice	cytosol	38.18	43.3
TraesCS4A01G078900.2	Wheat	nucleus	37.67	41.43
TraesCS4B01G245400.1	Wheat	nucleus	37.67	41.43
TraesCS4D01G244000.1	Wheat	nucleus	36.82	40.49
HORVU4Hr1G067630.12	Barley	nucleus	35.96	40.0

Protein Annotations

EntrezGene:100252735	wikigene:100252735	MapMan:35.1	ProteinID:CCB50057	ProteinID:CCB50057.1	ncoils:Coil
UniProt:F6HCW2	EMBL:FN595527	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007010
GO:GO:0007275	GO:GO:0008017	GO:GO:0008150	GO:GO:0009832	GO:GO:0009987	GO:GO:0010051
GO:GO:0016043	EntrezGene:LOC100252735	wikigene:LOC100252735	InterPro:MAP70	PFAM:PF07058	PANTHER:PTHR31246
PANTHER:PTHR31246:SF5	UniParc:UPI000198618B	ArrayExpress:VIT_00s0194g00260	EnsemblPlantsGene:VIT_00s0194g00260	EnsemblPlants:VIT_00s0194g00260.t01	unigene:Vvi.18098
unigene:Vvi.23068	RefSeq:XP_002267938	RefSeq:XP_002267938.1	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:+:10723945..10728792

Molecular Weight (calculated)

65692.6 Da

IEP (calculated)

9.504

GRAVY (calculated)

-0.722

Length

584 amino acids

Sequence
(BLAST)

001: MVDYKELVGG GGDELSLAHS DPIVLEFNRL QNQLKEKDRE LGVASSEIKA LRATIVLKDK ALEQFRNEVN KLDERLGVIE NLLKQKDLEI KKLTSEKKDA
101: LAAQFAAEAA LRRVHANQKD DDTVPIEDVI APLEADIKMY KIEIGRLQED NKALERHIKS KESALLEAER ILRSALERAL IVEEVQNQNF ELKRQIEICQ
201: EENKILDKTN RQKVLEVEKL SQTIQELEEA ILAGGVAANA IRDYRRQISE LNEEKRTLER ELARVKVSAN RVATVVANEW KDENDKVMPI KQWLEERRLL
301: QAETQRLRDK LAISERTAKA EAQLKDKLKL RLKTLEEGLK QVSSFSENPY LSCRSPKPEK SNHILGFLSG NGGLKRRSTS QPRGSCIGKT SPLMPPNVEN
401: GAADAAGELK GVNSLKKKYA SGENMLRKSL WASRSKVADI GGKENTEMKS NTDMHIDKFN NDTAVSADAK IKGGAKEETQ NVGSAGFDSE DMVSAFLYDR
501: LQREVINLRK SCEVKNNTLT AKDDEIKMLM RKVDALSKAI EVESKKIKRE AAAREKEAIS TKADENKKIR NTDSSKRRVA KASS

Best Arabidopsis Sequence Match ( AT4G17220.1 )
(BLAST)

001: MTAAENPFVS DTSSLQSQLK EKEKELLAAK AEVEALRTNE ELKDRVFKEL RENVRKLEEK LGATENQVDQ KELERKKLEE EKEDALAAQD AAEEALRRVY
101: THQQDDDSLP LESIIAPLES QIKIHKHEIS ALQEDKKALE RLTKSKESAL LEAERILRSA LERALIVEEV QNHNFELRRQ IEICQDENKF LEKINRQKVL
201: EIEKLSQSIV ELEEAILAGG TAANAVRDYR RQISQLNDEK RTLERELARV KVSASRVALA VANEWKDEND RVMPVKQWLE ERRILHGEMQ KLKDKLAVSE
301: RTAKAESQLK ERLKLRLKTI EDGLKGPNTF FVSPTTKTEK SGKILGFLTS GGGSKKRSSS QLRGSVTGRI HAMNQPIDRV GESDEMENSK ITANGLTDQH
401: EEDSERKTEE DGNVYSEDMV SGFLYDRLQK EVIALRKLCE SKEGTINAKN EEIKMLLKKV DALTKAIEVE TKKAKREAAA REKENALAML NEESKLCRKA
501: KLPRSRIPNP RCQ

Arabidopsis Description

MAP70.5Microtubule-associated protein 70-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYX3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.