Factsheet for VIT_11s0016g04610.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0063g02480.t01
VIT_03s0091g00480.t01
VIT_05s0020g01130.t01
VIT_05s0102g00080.t01
VIT_07s0205g00030.t01
VIT_08s0056g00160.t01
VIT_11s0016g04610.t01
VIT_13s0067g03220.t01
VIT_16s0013g00610.t01
VIT_17s0000g06020.t01
VIT_18s0122g00480.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19960.1	VIT_16s0013g00610.t01	AT1G02140.1	21798944
AT5G19960.1	VIT_03s0091g00480.t01	AT1G49850.1	21798944
AT5G19960.1	VIT_05s0102g00080.t01	AT2G43370.1	21798944
AT5G19960.1	VIT_05s0020g01130.t01	AT3G06980.1	21798944
AT5G19960.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944
AT5G19960.1	VIT_08s0056g00160.t01	AT3G60360.1	21798944
AT5G19960.1	VIT_03s0063g02480.t01	AT4G34460.1	21798944
AT5G19960.1	VIT_13s0067g03220.t01	AT5G05190.1	21798944
AT5G19960.1	VIT_11s0016g04610.t01	AT5G19960.1	21798944
AT5G19960.1	VIT_18s0122g00480.t01	AT5G42820.1	21798944
AT5G19960.1	VIT_07s0205g00030.t01	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56658	Soybean	nucleus	52.74	50.14
KRH03775	Soybean	nucleus	51.59	49.04
GSMUA_Achr7P08450_001	Banana	nucleus	51.01	48.9
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	52.74	46.45
Zm00001d016410_P006	Maize	nucleus	40.63	42.86
KXG29764	Sorghum	nucleus	40.63	42.86
Zm00001d053613_P001	Maize	nucleus	38.33	40.8
TraesCS6A01G178400.1	Wheat	nucleus	38.33	38.11
TraesCS6D01G166200.2	Wheat	nucleus	38.33	37.89
TraesCS6B01G205800.2	Wheat	nucleus	38.33	37.89
CDX70900	Canola	nucleus	34.87	37.46
CDY42320	Canola	nucleus	34.58	37.15
HORVU6Hr1G036810.5	Barley	nucleus	38.04	36.77
AT5G19960.1	Thale cress	cytosol	35.45	36.5
CDY44955	Canola	nucleus	33.14	35.6
Bra020076.1-P	Field mustard	nucleus	32.85	35.29
CDX88867	Canola	nucleus	30.26	24.19
Bra006526.1-P	Field mustard	nucleus	29.68	23.46
VIT_06s0004g06440.t01	Wine grape	nucleus	14.7	11.89

Protein Annotations

EntrezGene:100245744	wikigene:100245744	Gene3D:3.30.70.330	MapMan:35.2	EMBL:AM475597	ProteinID:CAN83717
ProteinID:CAN83717.1	ProteinID:CBI28137	ProteinID:CBI28137.3	ncoils:Coil	UniProt:D7TBV2	EMBL:FN595756
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
EntrezGene:LOC100245744	wikigene:LOC100245744	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23147
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGR:TC53586	UniParc:UPI000198420F
ArrayExpress:VIT_11s0016g04610	EnsemblPlantsGene:VIT_11s0016g04610	EnsemblPlants:VIT_11s0016g04610.t01	unigene:Vvi.2868	RefSeq:XP_002281678	RefSeq:XP_002281678.2
RefSeq:XP_002281678.3	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:-:3917007..3928101

Molecular Weight (calculated)

40844.0 Da

IEP (calculated)

5.659

GRAVY (calculated)

-1.363

Length

347 amino acids

Sequence
(BLAST)

001: MTIDDDNSIY VGGLPYNATE DSIRKVFNLY GAIVAVKIIN ERGVGGKCYG FVTFTNPRSA IDAINDMNGR DIDGRIVVVN EVRTRGGRSN FGRESFRRNS
101: ERGMDWDRGR DRERDYGHDK DHFRDRNIDR SRDHDRERER GHERARDHDR TRDRFMDRNR DQDRDMEDNE QEHSRNHDQD WERDHDIDWD RDREMNNTND
201: HDKSGDKDEH SKKRNGGWHS RGLSSDSDGD YHDQVEEVDR SIQRREELQK EISQMEERLE EKQQLVLDLQ KKSLKLEGAL TAAKKLSSQR QLQLTKLHRC
301: FLQVKENTER LKSCEQELQT VLGAAMMEID IVDDVGLRDG ILEKGRT

Best Arabidopsis Sequence Match ( AT5G19960.1 )
(BLAST)

001: MTMDDGNSVY VGGLPYDITE EAVRRVFSIY GSVLTVKIVN DRSVRGKCYG FVTFSNRRSA DDAIEDMDGK SIGGRAVRVN DVTTRGGRMN PGPGRLQPHG
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP

Arabidopsis Description

Glycine-rich RNA-binding protein, putative [Source:UniProtKB/TrEMBL;Acc:Q8RWF8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.