Factsheet for VIT_07s0205g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0179g00350.t01
VIT_00s0194g00260.t01
VIT_01s0146g00270.t01
VIT_02s0012g00290.t01
VIT_02s0025g02980.t01
VIT_03s0017g00210.t01
VIT_03s0088g00460.t01
VIT_05s0020g04480.t01
VIT_05s0029g00050.t01
VIT_13s0067g02400.t01
VIT_15s0021g02140.t01
VIT_15s0046g02250.t01
VIT_16s0039g01880.t01
VIT_16s0115g00130.t01
VIT_17s0000g01360.t01
VIT_17s0000g08940.t01
VIT_19s0027g01340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65683.1	VIT_02s0025g02980.t01	AT1G01050.1	21798944
AT5G65683.1	VIT_03s0088g00460.t01	AT1G01510.1	21798944
AT5G65683.1	VIT_15s0046g02250.t01	AT1G01510.1	21798944
AT5G65683.1	VIT_15s0021g02140.t01	AT2G44950.1	21798944
AT5G65683.1	VIT_16s0039g01880.t01	AT3G03000.1	21798944
AT5G65683.1	VIT_03s0017g00210.t01	AT3G08530.1	21798944
AT5G65683.1	VIT_16s0115g00130.t01	AT3G08530.1	21798944
AT5G65683.1	VIT_19s0027g01340.t01	AT3G08530.1	21798944
AT5G65683.1	VIT_00s0179g00350.t01	AT3G22960.1	21798944
AT5G65683.1	VIT_05s0020g04480.t01	AT3G22960.1	21798944
AT5G65683.1	VIT_05s0029g00050.t01	AT3G24140.1	21798944
AT5G65683.1	VIT_17s0000g01360.t01	AT3G48550.1	21798944
AT5G65683.1	VIT_17s0000g08940.t01	AT3G54170.1	21798944
AT5G65683.1	VIT_13s0067g02400.t01	AT3G56270.1	21798944
AT5G65683.1	VIT_00s0194g00260.t01	AT4G17220.1	21798944
AT5G65683.1	VIT_02s0012g00290.t01	AT4G17680.1	21798944
AT5G65683.1	VIT_01s0146g00270.t01	AT5G43280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078676	Potato	plastid	66.31	61.18
Solyc02g091710.2.1	Tomato	plastid	66.46	60.72
VIT_18s0001g08100.t01	Wine grape	plastid	65.4	56.67
KRH74431	Soybean	mitochondrion	56.71	54.71
KRH39527	Soybean	extracellular, golgi	44.05	53.42
KRH45468	Soybean	cytosol, peroxisome	30.95	50.37
KRH75634	Soybean	nucleus	47.26	47.84
CDY25618	Canola	nucleus, peroxisome, plastid	48.02	47.58
Bra030218.1-P	Field mustard	nucleus	48.17	47.02
GSMUA_Achr5P14740_001	Banana	mitochondrion	49.09	46.53
CDX89500	Canola	cytosol, peroxisome, plastid	47.71	46.51
GSMUA_Achr7P01890_001	Banana	mitochondrion	50.61	46.5
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	48.32	46.01
Bra017859.1-P	Field mustard	plastid	44.21	45.89
CDY31616	Canola	nucleus	47.87	45.71
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	47.71	45.69
AT2G22680.1	Thale cress	cytosol, peroxisome, plastid	47.56	45.68
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	50.76	45.49
CDY52535	Canola	plastid	49.09	45.35
GSMUA_Achr4P22090_001	Banana	nucleus	49.24	45.17
Bra031849.1-P	Field mustard	plastid	48.63	45.06
CDY08765	Canola	plastid	47.87	44.35
Zm00001d024940_P001	Maize	peroxisome	49.7	44.23
Bra024408.1-P	Field mustard	plastid	47.71	44.21
AT5G65683.1	Thale cress	peroxisome, plastid	47.56	43.51
KRH45469	Soybean	nucleus	11.74	43.5
Zm00001d004553_P001	Maize	peroxisome	49.54	43.33
TraesCS2A01G045100.1	Wheat	peroxisome	50.15	43.29
TraesCS2D01G043700.1	Wheat	peroxisome	50.15	43.12
CDY45614	Canola	plastid	46.8	43.12
TraesCS2B01G057300.1	Wheat	peroxisome	50.0	42.6
AT4G37890.1	Thale cress	nucleus	46.95	41.68
OQU81040	Sorghum	peroxisome	44.66	40.98
CDY37838	Canola	plastid	30.34	39.8
VIT_15s0024g01790.t01	Wine grape	nucleus	17.23	39.37
VIT_19s0135g00160.t01	Wine grape	nucleus	16.77	38.33
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	31.25	28.87
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	31.4	28.26
VIT_00s0125g00180.t01	Wine grape	plasma membrane	27.59	26.01
VIT_00s0475g00020.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	18.45	23.36

Protein Annotations

MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	ProteinID:CBI18619	ProteinID:CBI18619.3	UniProt:D7SSI6
EMBL:FN594978	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	PFAM:PF00092
PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF59	SMART:SM00184
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0001BE141E	ArrayExpress:VIT_07s0205g00030	EnsemblPlantsGene:VIT_07s0205g00030
EnsemblPlants:VIT_07s0205g00030.t01	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf

Description

No Description!

Coordinates

chr7:+:15112795..15115917

Molecular Weight (calculated)

71637.8 Da

IEP (calculated)

10.131

GRAVY (calculated)

-0.376

Length

656 amino acids

Sequence
(BLAST)

001: MVTGWRKAFC TTVPKDGEIR EAREKQKHSN DPNPNPSPRF GAKFSFFSTG SNPSTPRLQS HSGLRCRTTT TPATSAQNSP RIQCKTAKSP GLFQCSNPSS
101: PKSPSSFSLL KASLKLSKSR CGICIQSVKT GQGTAIFTAE CSHAFHFPCI AAHVRKHGSL VCPVCCSNWK EVPLLAVHED QKPEINERRQ FAPSDLKAYD
201: DDEPLMSPTT GARFIPIPES DENEEEEANV ENVDVRLLPE AAVVSVGRSY ETYVAVLKVK APPVPATINT TTSSLLNPAR RAPIDLVTVL DVGGGMTGAK
301: LQMMKRAMRL VISSLSSTDR LSIVAFSASS KRLMPLKRMT TTGRRSARRI IESLIAGQGT SAGEALKKAS KVLEDRRERN PVASIMLLSD GQNERVSSKS
401: TNPNRPSNPA EDAFAKCVGG LLSVVVQDLR VQLGFASGSA PAEIAAVYCC TGRPNLMGSG SVRLGDLYAE DERELLVELK VPTSAIGAHH VLSVRCSYKD
501: PSSQQLIYGK EQALLVPRPH AVRSAGPHIE RLRNLYITTR AVAESRRLVE HNDISAAHHL LSSARALLIQ QNSKLAQDFL RGLEAELTNL HWRRQHQLQI
601: QRPRATGREA ASLDEKGEPL TPTSAWRAAE RLAKVAIMRK SLNRVSDLHG FENARF

Best Arabidopsis Sequence Match ( AT5G49665.1 )
(BLAST)

001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF

Arabidopsis Description

WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.