Factsheet for VIT_13s0019g04440.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059986	Potato	nucleus	72.25	70.56
Solyc05g056140.2.1	Tomato	nucleus	71.83	70.05
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	70.85	69.0
CDX91506	Canola	mitochondrion	58.59	68.42
CDX74871	Canola	mitochondrion	58.73	68.36
Bra005066.1-P	Field mustard	mitochondrion	63.1	68.29
AT2G38970.1	Thale cress	mitochondrion	65.35	67.05
GSMUA_Achr5P20480_001	Banana	mitochondrion	55.63	62.3
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	58.59	61.0
GSMUA_Achr11P...	Banana	mitochondrion	53.52	60.8
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	53.38	59.22
Zm00001d017247_P002	Maize	mitochondrion	54.79	55.89
GSMUA_Achr11P...	Banana	mitochondrion	42.25	55.76
OQU85324	Sorghum	mitochondrion	54.51	55.05
Zm00001d051119_P001	Maize	nucleus	53.24	54.94
TraesCS2D01G361900.1	Wheat	mitochondrion	53.52	54.91
Os02t0619600-01	Rice	mitochondrion	54.65	54.73
TraesCS2B01G382300.1	Wheat	mitochondrion	53.24	54.39
TraesCS6D01G207700.2	Wheat	mitochondrion	54.23	54.23
TraesCS6B01G254400.1	Wheat	mitochondrion	54.23	54.23
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	54.23	54.07
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	52.82	53.88
TraesCS6A01G227300.1	Wheat	mitochondrion	53.8	53.73
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	52.82	53.57
Os04t0508800-01	Rice	plasma membrane	52.25	52.4
Zm00001d027622_P001	Maize	mitochondrion	50.7	52.02
OQU93256	Sorghum	mitochondrion	50.56	51.43
TraesCS4B01G344100.1	Wheat	mitochondrion	51.13	51.34
TraesCS5A01G512800.2	Wheat	mitochondrion	50.99	51.2
OQU81931	Sorghum	mitochondrion	50.14	51.08
TraesCS4D01G339200.1	Wheat	mitochondrion	50.56	50.78
HORVU4Hr1G084340.1	Barley	mitochondrion	50.28	50.49
Os03t0142500-01	Rice	plasma membrane	49.3	50.43
Zm00001d025825_P001	Maize	mitochondrion	49.72	50.14
GSMUA_Achr2P11780_001	Banana	golgi	30.7	46.19
VIT_00s0125g00180.t01	Wine grape	plasma membrane	44.37	45.26
VIT_07s0205g00030.t01	Wine grape	nucleus	28.87	31.25
VIT_18s0001g08100.t01	Wine grape	plastid	30.28	28.4
VIT_00s0475g00020.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	18.03	24.71
VIT_15s0024g01790.t01	Wine grape	nucleus	7.04	17.42
VIT_19s0135g00160.t01	Wine grape	nucleus	7.04	17.42

Protein Annotations

EntrezGene:100253096	wikigene:100253096	Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EMBL:AM470417
ProteinID:CAN70517	ProteinID:CAN70517.1	ProteinID:CCB56175	ProteinID:CCB56175.1	ncoils:Coil	UniProt:F6HNF6
EMBL:FN595998	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	EntrezGene:LOC100253096
wikigene:LOC100253096	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF71	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
SignalP:SignalP-noTM	UniParc:UPI00019848B7	ArrayExpress:VIT_13s0019g04440	EnsemblPlantsGene:VIT_13s0019g04440	EnsemblPlants:VIT_13s0019g04440.t01	InterPro:VWF_A
InterPro:Vwaint_dom	RefSeq:XP_002273050	RefSeq:XP_002273050.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr13:-:5829781..5834326

Molecular Weight (calculated)

76960.3 Da

IEP (calculated)

7.874

GRAVY (calculated)

-0.339

Length

710 amino acids

Sequence
(BLAST)

001: MGSAWRRAKL ALGFNMCVYV PATAEEEDSA DRLSDAALLS PAMPMTPTPS SGGLRLSKSA SRSSKKTCAI CLTSMKRGHG QAIFTAECSH SFHFHCITSN
101: VKHGSQICPV CRAKWKEIPF EGPNLDPPPR RARINPVDWH QNNDLMTIIR RLPPPRLDSN RNIMALHQAS EPGVFNDDES LDHQPVPAER NSSNGNAAEN
201: NPVRTVEIKT YPEVSAAPRS KSYDNFTVLV HLKAAVANTG QNIQRNMSNS PLNSHNPRAP VDLVTVLDIS GSMAGTKLAL LKRAMGFVIQ NLGSSDRLSV
301: IAFSSTARRL FPLRRMTDAG RQQALQAVNS LVANGGTNIA EGLRKGAKVM EDRKERNPVS SIILLSDGQD TYTVNGSSGN QPQPNYQLLL PLSMHGSQNT
401: GFQIPVHSFG FGTDHDASSM HTISEISGGT FSFIETESVI QDAFAQCIGG LLSVVVQELQ VGVECVDPSL RLGSLKAGSY PSHVMGDART GSIDVGDLYA
501: DEERDFLVSV KVPAELSGAK TSLIKVRCVY KDPLTKEMAT LESEEVRIER PETAGQEVVS IEVDRQRNRL QAAEAMVQAR AAAEQGDLAG AVSILESCRK
601: ALSDTVSAKS HDRLCVALDA ELKEMQERMA SRHVYEASGR AYILSGLSSH SWQRATARGD STDGSSLVQA YQTPSMAEML TRSQATLLGS PSAQRLIRPV
701: WSCTSQPKPR

Best Arabidopsis Sequence Match ( AT2G38970.1 )
(BLAST)

001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.