Factsheet for Os04t0508800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	78.25	79.14
TraesCS2D01G361900.1	Wheat	mitochondrion	77.12	78.9
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	77.54	78.88
TraesCS2B01G382300.1	Wheat	mitochondrion	77.12	78.56
OQU81931	Sorghum	mitochondrion	71.33	72.45
Zm00001d025825_P001	Maize	mitochondrion	70.62	71.02
Os02t0619600-01	Rice	mitochondrion	70.48	70.38
GSMUA_Achr5P20480_001	Banana	mitochondrion	50.56	56.47
GSMUA_Achr11P...	Banana	mitochondrion	49.72	56.32
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	49.86	55.16
CDY31517	Canola	extracellular, mitochondrion, plastid	44.92	53.18
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	52.4	52.25
CDY52708	Canola	extracellular, mitochondrion, plastid	44.07	51.83
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	53.11	51.58
GSMUA_Achr11P...	Banana	mitochondrion	39.12	51.49
Os04t0266700-00	Rice	cytosol	8.19	50.88
Os02t0806700-01	Rice	nucleus	51.84	50.76
PGSC0003DMT400059986	Potato	nucleus	51.84	50.48
Bra005066.1-P	Field mustard	mitochondrion	46.47	50.15
Solyc05g056140.2.1	Tomato	nucleus	51.55	50.14
CDX74871	Canola	mitochondrion	43.08	50.0
Bra020234.1-P	Field mustard	mitochondrion	49.01	49.93
CDX91506	Canola	mitochondrion	42.37	49.34
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	49.01	49.29
AT2G38970.1	Thale cress	mitochondrion	47.88	48.99
Bra002456.1-P	Field mustard	mitochondrion, plastid	48.16	48.71
Os03t0142500-01	Rice	plasma membrane	47.74	48.7
PGSC0003DMT400020896	Potato	mitochondrion, plastid	50.0	48.29
Solyc11g069600.1.1	Tomato	plastid	49.44	47.75
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	35.88	47.12
CDY67781	Canola	cytosol	35.03	46.88
CDY32819	Canola	cytosol	38.98	45.7
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	43.64	45.31
AT1G08050.1	Thale cress	plastid	40.82	45.09
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	38.84	45.01
GSMUA_Achr2P11780_001	Banana	golgi	28.11	42.16
CDX93597	Canola	cytosol	38.28	42.15
CDX95099	Canola	cytosol	33.19	41.81
Os08t0126100-00	Rice	nucleus	37.15	37.36
Os12t0203500-00	Rice	vacuole	26.84	34.67
Os12t0431700-00	Rice	cytosol	9.32	31.88
Os08t0126000-00	Rice	plastid	33.9	31.7
Os10t0464500-00	Rice	extracellular, plasma membrane	19.35	28.19
Os10t0464800-00	Rice	nucleus	35.73	26.66
Os03t0403600-01	Rice	cytosol, extracellular	14.27	24.28
Os09t0298500-01	Rice	nucleus	17.51	23.31
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	22.6	23.22
Os11t0687100-01	Rice	nucleus	20.62	23.06
Os11t0650600-00	Rice	cytosol	17.94	22.32
Os06t0578700-01	Rice	golgi	18.22	22.16
Os11t0650500-00	Rice	cytosol	18.36	22.0
Os11t0687200-02	Rice	golgi	18.22	21.57
Os06t0578100-00	Rice	nucleus	20.06	21.32
Os01t0640200-00	Rice	cytosol	18.64	21.09
Bra018663.1-P	Field mustard	nucleus	37.99	20.39
Os11t0679000-00	Rice	cytosol	15.4	18.79

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EntrezGene:4336357	ProteinID:BAF15187.1	ProteinID:BAS90016.1
ProteinID:CAE04734.1	ProteinID:EAZ31303.1	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
EnsemblPlantsGene:Os04g0508800	EnsemblPlants:Os04t0508800-01	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089
PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF49	UniProt:Q7XM95	SMART:SM00184	SMART:SM00327
SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI00001B19B9	InterPro:VWF_A	InterPro:Vwaint_dom	RefSeq:XP_015636693.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

RING finger proteinSimilar to Retroelement pol polyprotein-like. (Os04t0508800-01)

Coordinates

chr4:-:25424202..25429268

Molecular Weight (calculated)

77291.1 Da

IEP (calculated)

8.302

GRAVY (calculated)

-0.462

Length

708 amino acids

Sequence
(BLAST)

001: MEDAWRKAKR ALGLGLCVHV PEAEEGERED CSSERRRRLP AAASGARCRG EAAVTVGPES VPAPSDVPVP LPLPGVVRRS KSGSSRSSSK RKCAICFDSM
101: RHGNGQALFT AECSHMFHFH CISSNVKHGN YFCPICRAKW KEIPFNRSLS SNIPHGRIGV SRARLTQQDA NMALLHQVPN HHQRVRRPHT SEPADFNDDE
201: PLQQPEVFDN LNVRSTKTAE INTYPEFSTI PQSSSKDDFA ILIHLKAPSA NPDQGTGKLA NESSAGSSRN RAPVDLVTVL DVSGSMAGTK LALLKRAMGF
301: VVQHLGPSDR LSVIAFSSSA RRLFHLQRIS HHGRQQALQA INSLGASGGT NIADALKKAM KVIEDRSYKN SVCSIILLSD GQDTYNISSS VQGASPDYKS
401: LVPSSIINDA RHTVPLHAFG FGADHDSDSL HSIAQASGGT FSFIEDEGVM QDAFAQCIGG LLSIVIQEMR VSMECVHPGV QLSSIKSGSY PSKVARDGRN
501: GSVDIGHLYA DEERDILLSV NIPQSRHQTS ALKVSCAYRD PVTGETIKIQ GDEVKINRPT TSNISEHVSI EVDRERNRIQ AAESIECARA AAEKGALSEA
601: VAILEDCRRT LSQSFASRSG DRLSLSLDAE LREMQERMAN RQLYESSGRA YMLSGLSSHS WQRATARGDS TDSSTVIYSY QTPSMVEMLQ HSQNHLPSPQ
701: GRQRPRPR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.