Skip to main content
crop-pal logo
Rice
Search for another protein from :
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular

Predictor Summary:
  • nucleus 3
  • mitochondrion 4
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 extracellular: 24083427
plasma membrane: 28056797
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os12t0431700-00 Rice cytosol 13.58 31.88
Zm00001d032750_P001 Maize plastid 32.1 24.84
Os03t0142500-01 Rice plasma membrane 31.07 21.76
EER91513 Sorghum mitochondrion 31.28 21.59
Zm00001d014084_P001 Maize mitochondrion 30.86 21.34
Os02t0619600-01 Rice mitochondrion 30.86 21.16
Os04t0508800-01 Rice plasma membrane 28.19 19.35
Os02t0806700-01 Rice nucleus 28.6 19.23
Os08t0126100-00 Rice nucleus 23.25 16.05
TraesCS1A01G146700.1 Wheat mitochondrion 20.99 15.72
Os08t0126000-00 Rice plastid 23.66 15.19
Os10t0464800-00 Rice nucleus 25.31 12.96
Os11t0650600-00 Rice cytosol 14.61 12.48
Os11t0650500-00 Rice cytosol 15.02 12.35
Os12t0203500-00 Rice vacuole 13.58 12.04
Os11t0679000-00 Rice cytosol 13.99 11.72
Os11t0687100-01 Rice nucleus 15.02 11.53
Os01t0640200-00 Rice cytosol 14.4 11.18
Os04t0101800-01 Rice cytosol, mitochondrion, peroxisome, plastid 15.64 11.03
Os06t0578100-00 Rice nucleus 14.81 10.81
Os09t0298500-01 Rice nucleus 11.11 10.15
Os06t0578700-01 Rice golgi 11.32 9.45
Os11t0687200-02 Rice golgi 10.49 8.53
Os03t0403600-01 Rice cytosol, extracellular 7.0 8.17
Os04t0266700-00 Rice cytosol 0.41 1.75
Protein Annotations
Gene3D:3.30.40.10Gene3D:3.40.50.410MapMan:35.1UniProt:A0A0P0XV48ProteinID:BAT11199.1InterPro:IPR001841
InterPro:IPR002035InterPro:IPR013083InterPro:IPR036465EnsemblPlantsGene:Os10g0464500EnsemblPlants:Os10t0464500-00PFAM:PF13519
PFAM:PF13639PFscan:PS50089PFscan:PS50234PANTHER:PTHR10579PANTHER:PTHR10579:SF54SMART:SM00184
SMART:SM00327SUPFAM:SSF53300SUPFAM:SSF57850UniParc:UPI000393A671InterPro:VWF_AInterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHDSEG:segInterPro:vWFA_dom_sf:::
Description
Zinc finger, RING-type domain containing protein. (Os10t0464500-00)
Coordinates
chr10:-:17140936..17145821
Molecular Weight (calculated)
52128.6 Da
IEP (calculated)
9.837
GRAVY (calculated)
-0.179
Length
486 amino acids
Sequence
(BLAST)
001: MAVAKWERAK RALATRLCVR APRVRAAAAE AEGEGEEGEG RGRSVAASPP AHVASSRRLS RCGSRSSTKI CAICLGGMCS GNGQALFTAE CSHKFHFHCI
101: SSSVRHGNTV CPICRAVWKE LPFQGPLPAA AAADASLLGT ARVNPHPLDD RHQHQRMAVV RRLSRGDSVT RQWQLPIFRT LDGGIFDDDE QLDLHPAEDV
201: VGTQDVDSIV ADEMAPASVG ITTYAAFPAM EESVMVEEFA VLIHLKAPSS PATVTSRAPI DLVTVLDVSW SMAGTKLALL KRAMSFVIQA LGPGDRLSVV
301: TFSSSARRLF PLRKMTESGR QRALQRVSSL VADGGTNIAD ALRKAARVME DRRERNPVCS IVLLSDGRDT YTVPVPRGGG GGGDQPDYAV LVPSSLLPGG
401: GSARHVQRAT ARGDSTELTS VIHTYQTPFM VDMLQRSQTL QPEVVVAMSR SAPLPAPSLS LSPPPPPSQL RRRSVRPAMS FPGRRS
Best Arabidopsis Sequence Match ( AT2G38970.1 )
(BLAST)
001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR
Arabidopsis Description
Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.