Factsheet for Os04t0101800-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

plastid 3
peroxisome 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0322300-00
Os01t0866500-01
Os01t0925200-01
Os02t0687500-01
Os03t0126100-01
Os03t0215700-01
Os03t0339700-01
Os04t0386300-01
Os04t0550400-01
Os04t0687100-01
Os05t0438500-01
Os05t0476100-01
Os05t0586300-00
Os06t0474200-01
Os07t0181000-01
Os07t0677900-01
Os10t0406100-01
Os10t0533000-01
Os10t0565500-01
Os11t0104866-00
Os11t0104900-00
Os12t0104766-00
Os12t0104800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65683.1	Os01t0322300-00	AT1G01050.1	21798944
AT5G65683.1	Os01t0866500-01	AT1G01050.1	21798944
AT5G65683.1	Os04t0687100-01	AT1G01050.1	21798944
AT5G65683.1	Os05t0438500-01	AT1G01050.1	21798944
AT5G65683.1	Os10t0406100-01	AT1G01050.1	21798944
AT5G65683.1	Os03t0126100-01	AT1G01510.1	21798944
AT5G65683.1	Os10t0533000-01	AT1G01510.1	21798944
AT5G65683.1	Os04t0550400-01	AT2G44950.1	21798944
AT5G65683.1	Os11t0104866-00	AT3G08530.1	21798944
AT5G65683.1	Os11t0104900-00	AT3G08530.1	21798944
AT5G65683.1	Os12t0104766-00	AT3G08530.1	21798944
AT5G65683.1	Os12t0104800-01	AT3G08530.1	21798944
AT5G65683.1	Os07t0181000-01	AT3G22960.1	21798944
AT5G65683.1	Os05t0586300-00	AT3G24140.1	21798944
AT5G65683.1	Os04t0386300-01	AT3G48550.1	21798944
AT5G65683.1	Os06t0474200-01	AT3G54170.1	21798944
AT5G65683.1	Os03t0339700-01	AT3G56270.1	21798944
AT5G65683.1	Os05t0476100-01	AT3G56270.1	21798944
AT5G65683.1	Os07t0677900-01	AT3G56270.1	21798944
AT5G65683.1	Os03t0215700-01	AT4G17220.1	21798944
AT5G65683.1	Os02t0687500-01	AT4G17680.1	21798944
AT5G65683.1	Os10t0565500-01	AT4G17680.1	21798944
AT5G65683.1	Os01t0925200-01	AT5G43280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024940_P001	Maize	peroxisome	75.47	70.56
Zm00001d004553_P001	Maize	peroxisome	75.91	69.73
TraesCS2A01G045100.1	Wheat	peroxisome	74.6	67.63
OQU81040	Sorghum	peroxisome	69.81	67.27
TraesCS2D01G043700.1	Wheat	peroxisome	74.02	66.84
TraesCS2B01G057300.1	Wheat	peroxisome	74.31	66.49
GSMUA_Achr7P01890_001	Banana	mitochondrion	52.25	50.42
GSMUA_Achr4P22090_001	Banana	nucleus	52.25	50.35
GSMUA_Achr5P14740_001	Banana	mitochondrion	49.49	49.28
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	51.81	48.77
VIT_07s0205g00030.t01	Wine grape	nucleus	46.01	48.32
PGSC0003DMT400078676	Potato	plastid	46.44	45.01
Solyc02g091710.2.1	Tomato	plastid	46.59	44.71
VIT_18s0001g08100.t01	Wine grape	plastid	48.04	43.73
Solyc04g076860.2.1	Tomato	nucleus	47.46	43.6
KRH45468	Soybean	cytosol, peroxisome	25.4	43.42
PGSC0003DMT400016355	Potato	nucleus	46.73	42.71
KRH74431	Soybean	mitochondrion	41.94	42.5
KRH39527	Soybean	extracellular, golgi	33.09	42.14
CDY28148	Canola	plastid	40.49	41.09
KRH72527	Soybean	nucleus	38.75	41.01
AT5G49665.1	Thale cress	plastid	43.83	40.81
KRH16916	Soybean	nucleus	39.33	40.21
KRH75634	Soybean	nucleus	37.45	39.81
CDY25618	Canola	nucleus, peroxisome, plastid	38.17	39.73
Bra030218.1-P	Field mustard	nucleus	38.46	39.43
Bra040498.1-P	Field mustard	plastid	41.36	39.15
Bra017859.1-P	Field mustard	plastid	35.85	39.08
CDX89500	Canola	cytosol, peroxisome, plastid	37.88	38.78
CDY45010	Canola	mitochondrion, peroxisome	40.78	38.6
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	38.32	38.54
CDY31616	Canola	nucleus	38.17	38.28
AT2G22680.1	Thale cress	cytosol, peroxisome, plastid	37.3	37.63
Bra031849.1-P	Field mustard	plastid	37.45	36.44
CDY08765	Canola	plastid	37.3	36.3
Bra024408.1-P	Field mustard	plastid	37.16	36.16
CDY52535	Canola	plastid	37.01	35.92
AT4G37890.1	Thale cress	nucleus	38.03	35.45
CDY45614	Canola	plastid	36.57	35.39
AT5G65683.1	Thale cress	peroxisome, plastid	35.56	34.17
CDY37838	Canola	plastid	23.66	32.6
KRH45469	Soybean	nucleus	8.13	31.64
Os12t0431700-00	Rice	cytosol	8.27	27.54
Os12t0203500-00	Rice	vacuole	20.32	25.55
Os02t0806700-01	Rice	nucleus	25.69	24.48
Os03t0142500-01	Rice	plasma membrane	24.53	24.35
Os02t0619600-01	Rice	mitochondrion	24.38	23.7
Os04t0266700-00	Rice	cytosol	3.92	23.68
Os04t0508800-01	Rice	plasma membrane	23.22	22.6
Os09t0298500-01	Rice	nucleus	17.42	22.56
Os08t0126100-00	Rice	nucleus	22.79	22.3
Os08t0126000-00	Rice	plastid	20.75	18.89
Os10t0464800-00	Rice	nucleus	23.8	17.28
Os11t0650600-00	Rice	cytosol	14.08	17.05
Os11t0687100-01	Rice	nucleus	14.66	15.96
Os11t0650500-00	Rice	cytosol	13.5	15.74
Os10t0464500-00	Rice	extracellular, plasma membrane	11.03	15.64
Os11t0687200-02	Rice	golgi	12.92	14.88
Os03t0403600-01	Rice	cytosol, extracellular	8.85	14.66
Os06t0578700-01	Rice	golgi	12.34	14.6
Os06t0578100-00	Rice	nucleus	13.93	14.41
Os01t0640200-00	Rice	cytosol	13.06	14.38
Os11t0679000-00	Rice	cytosol	12.05	14.31

Protein Annotations

MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	EntrezGene:4334888	UniProt:A0A0P0W5W4	ProteinID:BAS87509.1
InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	EnsemblPlantsGene:Os04g0101800	EnsemblPlants:Os04t0101800-01
PFAM:PF13519	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF55	SMART:SM00184
SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI00006E1DB7	InterPro:VWF_A	RefSeq:XP_015633359.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

SOIL-SURFACE ROOTING 1Similar to H0102C09.6 protein. (Os04t0101800-01)

Coordinates

chr4:-:121735..125238

Molecular Weight (calculated)

73916.0 Da

IEP (calculated)

9.963

GRAVY (calculated)

-0.357

Length

689 amino acids

Sequence
(BLAST)

001: MGTGWRRALC TSVRRDPEQQ EVKRRGEAPS PRCGGGSRLG GFFSAISSSH SSSNPATTTP TLRCRTKPKP QSSSSDHQQQ LPSSAPAPKK RMPLLQALSV
101: PSSPRSPSRF ALLKASILPN KSRCGVCSHG VKTGAAAVFT AECSHSFHFP CIAAHAHALA AATALSCPVC AAPWRQAPFI NKRTTTTDDH KRKSYDDDEP
201: LLAPKAAAGA FNPIPEDDED DATEFRGFFP ARPRSGLAVT LAPDAALVSA GRRHGKYVVA VRVKAPALRS SPSTRAPIDL VTVLDVSQGM MGDKLHMLKR
301: GMRLVIASLG PADRLAIVAF SGAAKRLLPL RRMTRQGQRS ARQIVDRLVV CAAAQGQEQP QAVCVGDALR KATKVLEDRR DRNPVATVML LSDTQQQQQQ
401: QQDAIRRPPA APPATRFTHV EIPIGPGEEP ARSALVAEED DDQFSEHAFA KCLGGLVSVV MQEVQLELAF PTGEITAVYS CGHGQQAVAL GGGGGGAAVS
501: VSLGEMYAEE ERELLVELRA PLSQSHPHSL SVRCSYREPA SQETVRGAEQ QLVVPALHGG SSSRRLHDLF VATRAVAESR RLAELNDYAT AIHLLSSARA
601: VVVQSAEQGL VGSLDTELSD MRWRRGQSAG RRRGGESEET PVGTPRARGG EPLTPTSAWR AAEQLAKVAI MRKSMNRVSD LHGFENARF

Best Arabidopsis Sequence Match ( AT5G49665.1 )
(BLAST)

001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF

Arabidopsis Description

WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.